Wall clock time and date at job start Mon Mar 30 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99912 * 2 1 4 4 H 1.48498 * 109.46788 * 269.99760 * 3 2 1 5 5 H 1.48500 * 109.47016 * 29.99757 * 3 2 1 6 6 H 1.48504 * 109.47091 * 149.99691 * 3 2 1 7 7 C 1.37878 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99441 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.38228 * 120.00195 * 270.21448 * 10 9 7 12 12 C 1.38238 * 120.00114 * 180.26174 * 11 10 9 13 13 C 1.38234 * 119.99675 * 359.50218 * 12 11 10 14 14 C 1.50702 * 120.00257 * 180.25732 * 13 12 11 15 15 H 1.09010 * 108.82626 * 359.30527 * 14 13 12 16 16 C 1.52337 * 108.86910 * 117.82862 * 14 13 12 17 17 C 1.54260 * 112.58475 * 120.82145 * 16 14 13 18 18 S 1.83958 * 102.58168 * 24.53280 * 17 16 14 19 19 C 1.54258 * 108.87288 * 240.77326 * 14 13 12 20 20 C 1.38235 * 120.00220 * 0.28720 * 13 12 11 21 21 C 1.38234 * 119.99720 * 90.00232 * 10 9 7 22 22 H 0.97000 * 120.00269 * 0.02562 * 1 2 3 23 23 H 1.09010 * 109.46814 * 60.00114 * 9 7 2 24 24 H 1.09000 * 109.47139 * 300.00370 * 9 7 2 25 25 H 1.08004 * 120.00270 * 0.03576 * 11 10 9 26 26 H 1.08002 * 120.00519 * 179.78838 * 12 11 10 27 27 H 1.09000 * 108.87166 * 241.64545 * 16 14 13 28 28 H 1.09004 * 108.86580 * 0.02562 * 16 14 13 29 29 H 1.08997 * 110.78664 * 142.80587 * 17 16 14 30 30 H 1.09001 * 110.78818 * 266.26065 * 17 16 14 31 31 H 1.09000 * 110.78431 * 332.92683 * 19 14 13 32 32 H 1.09002 * 110.78481 * 96.37967 * 19 14 13 33 33 H 1.07996 * 120.00471 * 179.97438 * 20 13 12 34 34 H 1.08001 * 120.00294 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2303 -3.6446 0.0015 11 6 2.6820 -4.1676 -1.1957 12 6 3.5761 -5.2218 -1.1959 13 6 4.0265 -5.7463 0.0011 14 6 5.0057 -6.8918 0.0010 15 1 5.2237 -7.1682 -1.0307 16 6 6.2955 -6.4375 0.6723 17 6 6.6542 -7.2916 1.9058 18 16 5.7970 -8.8811 1.5555 19 6 4.3624 -8.0983 0.7153 20 6 3.5782 -5.2205 1.1984 21 6 2.6803 -4.1694 1.1985 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.3335 -3.7549 -2.1310 26 1 3.9264 -5.6327 -2.1313 27 1 7.1099 -6.5010 -0.0494 28 1 6.1840 -5.3988 0.9834 29 1 7.7319 -7.4399 1.9735 30 1 6.2673 -6.8361 2.8174 31 1 3.6212 -7.7670 1.4426 32 1 3.9182 -8.7835 -0.0067 33 1 3.9297 -5.6305 2.1336 34 1 2.3298 -3.7588 2.1339 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259850463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:15 Heat of formation + Delta-G solvation = 0.758277 kcal Electronic energy + Delta-G solvation = -15221.740645 eV Core-core repulsion = 12823.409205 eV Total energy + Delta-G solvation = -2398.331440 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.29200 -36.28565 -33.27716 -31.32835 -30.33915 -29.52579 -27.00903 -25.02363 -23.08842 -22.19789 -20.78907 -19.44683 -16.83918 -16.37211 -16.21103 -15.20059 -14.72077 -14.48066 -14.22083 -13.90229 -13.51505 -12.82837 -12.70397 -12.61400 -12.21561 -12.02425 -11.82920 -11.49845 -11.24180 -11.11010 -10.82848 -10.67464 -10.48793 -10.25366 -10.01794 -9.57029 -9.46258 -8.46560 -8.34520 -7.88148 -7.75261 -6.08247 -4.12447 1.77174 1.89681 1.98922 2.24775 3.27362 3.33814 3.37625 4.24967 4.41313 4.52992 4.59216 4.78724 5.02864 5.07831 5.22376 5.26103 5.38454 5.44116 5.54415 5.59457 5.67566 5.92457 5.95547 5.97880 6.19849 6.22450 6.57252 6.66574 7.03672 7.13220 7.13377 7.45708 7.66909 7.80294 7.87378 8.27295 8.92792 9.51651 11.01621 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.043997 B = 0.004393 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.251084 B = 6372.613019 C = 6581.096676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.046 3.954 10 C -0.031 4.031 11 C -0.122 4.122 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.043 4.043 15 H 0.085 0.915 16 C -0.121 4.121 17 C -0.061 4.061 18 S -0.318 6.318 19 C -0.052 4.052 20 C -0.116 4.116 21 C -0.122 4.122 22 H 0.262 0.738 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.118 0.882 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.149 -13.628 1.100 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.009 3.991 10 C -0.031 4.031 11 C -0.141 4.141 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.063 4.063 15 H 0.103 0.897 16 C -0.160 4.160 17 C -0.209 4.209 18 S -0.091 6.091 19 C -0.200 4.200 20 C -0.134 4.134 21 C -0.140 4.140 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.136 0.864 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.294 -14.701 1.358 17.998 hybrid contribution 0.129 2.163 -0.247 2.181 sum 10.423 -12.537 1.112 16.342 Atomic orbital electron populations 1.69955 1.06045 1.26871 1.50397 1.25012 0.94882 0.99269 0.95131 0.86537 0.79832 0.83143 0.78212 1.20554 1.21114 1.19809 1.21044 0.93014 0.89851 1.51149 0.92504 1.18376 0.92626 0.89697 0.98393 1.20725 0.95706 0.94742 0.91957 1.21080 0.98165 0.96379 0.98427 1.20914 0.98443 0.97433 0.96565 1.19477 1.00212 0.98358 0.93712 1.20586 0.92812 0.92079 1.00799 0.89656 1.22140 0.97021 1.00836 0.95996 1.24163 1.02723 0.92908 1.01111 1.87894 1.27315 1.16464 1.77411 1.24347 0.96828 0.97735 1.01087 1.20791 0.98549 0.97448 0.96619 1.21073 0.98110 0.96363 0.98417 0.92798 0.95323 0.95311 0.86399 0.87126 0.90676 0.89806 0.87967 0.89257 0.88690 0.87886 0.87337 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.17 9.09 -34.44 -0.31 -14.49 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.05 1.16 5.10 -29.04 -0.15 1.01 16 10 C -0.03 -0.66 5.07 -104.63 -0.53 -1.19 16 11 C -0.12 -2.30 9.70 -39.59 -0.38 -2.69 16 12 C -0.12 -1.80 9.66 -39.58 -0.38 -2.19 16 13 C -0.12 -1.67 4.47 -104.62 -0.47 -2.14 16 14 C -0.04 -0.49 2.83 -91.45 -0.26 -0.74 16 15 H 0.09 0.91 7.84 -51.92 -0.41 0.51 16 16 C -0.12 -1.26 5.78 -26.41 -0.15 -1.41 16 17 C -0.06 -0.59 7.46 37.82 0.28 -0.31 16 18 S -0.32 -3.67 23.26 -107.50 -2.50 -6.17 16 19 C -0.05 -0.57 6.83 37.82 0.26 -0.32 16 20 C -0.12 -1.80 8.11 -39.58 -0.32 -2.12 16 21 C -0.12 -2.28 9.70 -39.58 -0.38 -2.67 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 23 H 0.03 0.76 8.09 -51.92 -0.42 0.34 16 24 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 26 H 0.11 1.45 7.93 -52.49 -0.42 1.03 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.95 7.13 -51.93 -0.37 0.58 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.09 6.99 -51.93 -0.36 0.73 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.11 1.46 7.86 -52.49 -0.41 1.04 16 34 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 295.32 15.07 4.45 4.45 Total: -1.00 -29.05 295.32 -10.12 -39.17 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.89 Total: -0.61 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -2.90 Total: -27.69 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.50 Total: -6.17 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.05 -10.12 -39.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.927 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds