Wall clock time and date at job start Mon Mar 30 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33558 * 125.11266 * 2 1 4 4 C 1.38043 * 115.06923 * 179.75034 * 3 2 1 5 5 C 1.34863 * 114.67199 * 0.42640 * 4 3 2 6 6 C 1.47758 * 125.27526 * 179.86303 * 5 4 3 7 7 C 1.35520 * 127.12164 * 309.89655 * 6 5 4 8 8 O 1.34202 * 109.42843 * 180.25128 * 7 6 5 9 9 C 1.33805 * 111.33836 * 359.73880 * 8 7 6 10 10 C 1.50704 * 125.86543 * 179.97438 * 9 8 7 11 11 C 1.38806 * 108.25820 * 359.97438 * 9 8 7 12 12 C 1.41112 * 127.38668 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00388 * 327.73878 * 12 11 9 14 14 C 1.39805 * 120.00191 * 147.73812 * 12 11 9 15 15 N 1.30988 * 119.99310 * 335.41641 * 14 12 11 16 16 Si 1.86792 * 120.00016 * 155.13782 * 14 12 11 17 17 H 1.48510 * 109.46812 * 180.27863 * 16 14 12 18 18 H 1.48501 * 109.47362 * 300.27580 * 16 14 12 19 19 H 1.48498 * 109.47468 * 60.28081 * 16 14 12 20 20 S 1.75858 * 125.10456 * 179.97438 * 2 1 3 21 21 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46511 * 300.00211 * 1 2 3 23 23 H 1.09001 * 109.46769 * 59.99711 * 1 2 3 24 24 H 1.07994 * 122.46476 * 359.97438 * 3 2 1 25 25 H 1.08000 * 122.66741 * 180.25513 * 4 3 2 26 26 H 1.07995 * 125.28428 * 0.02562 * 7 6 5 27 27 H 1.08991 * 109.46882 * 264.96034 * 10 9 8 28 28 H 1.08998 * 109.47274 * 24.96940 * 10 9 8 29 29 H 1.09001 * 109.46553 * 144.96567 * 10 9 8 30 30 H 0.97001 * 120.00140 * 353.90381 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2752 1.0925 0.0000 4 6 3.6345 0.8518 0.0054 5 6 3.9751 -0.4531 0.0008 6 6 5.3578 -0.9741 0.0021 7 6 6.3696 -0.6104 -0.8228 8 8 7.4715 -1.3113 -0.5136 9 6 7.2470 -2.1457 0.5080 10 6 8.2554 -3.0840 1.1196 11 6 5.9259 -1.9986 0.9075 12 6 5.2642 -2.6836 1.9487 13 1 5.5381 -3.7012 2.1852 14 6 4.2541 -2.0451 2.6744 15 7 4.2302 -0.7378 2.7523 16 14 2.9344 -3.0559 3.5262 17 1 1.9839 -2.1476 4.2168 18 1 2.2026 -3.8646 2.5184 19 1 3.5673 -3.9590 4.5207 20 16 2.5183 -1.4387 0.0006 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8633 2.0908 -0.0004 25 1 4.3670 1.6454 0.0101 26 1 6.2991 0.1262 -1.6094 27 1 8.1554 -4.0703 0.6666 28 1 9.2609 -2.7027 0.9420 29 1 8.0789 -3.1575 2.1927 30 1 4.9600 -0.2164 2.3826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259852704.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:05 Heat of formation + Delta-G solvation = 19.710181 kcal Electronic energy + Delta-G solvation = -15744.215800 eV Core-core repulsion = 13210.873081 eV Total energy + Delta-G solvation = -2533.342719 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62021 -37.07190 -34.24939 -31.98664 -30.86614 -29.91122 -26.76259 -25.20401 -24.12653 -22.44863 -20.30416 -19.51272 -17.53557 -17.22024 -15.88927 -15.21336 -14.65796 -14.34036 -13.91382 -13.46400 -13.17311 -12.97240 -12.57116 -12.00196 -11.94624 -11.81456 -11.75398 -11.58009 -11.43645 -11.01555 -10.83107 -10.32222 -10.16883 -9.88665 -9.59618 -8.80668 -8.50973 -7.53080 -7.31811 -7.01292 -6.82442 -4.21468 1.71525 2.43263 2.83651 3.10567 3.27591 3.29852 3.45721 3.57265 4.09269 4.21180 4.37545 5.22994 5.45185 5.66486 5.75277 5.85354 5.94831 6.08966 6.21644 6.26236 6.42735 6.48508 6.56374 6.76895 6.97328 7.04852 7.07690 7.37142 7.53110 7.62586 8.08926 8.19982 8.55933 8.92086 9.11334 10.37960 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.011801 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.109431 B = 2372.037152 C = 3355.187343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.220 4.220 3 C -0.126 4.126 4 C -0.160 4.160 5 C -0.032 4.032 6 C -0.179 4.179 7 C -0.030 4.030 8 O -0.189 6.189 9 C -0.217 4.217 10 C -0.021 4.021 11 C 0.052 3.948 12 C -0.533 4.533 13 H 0.071 0.929 14 C 0.051 3.949 15 N -0.799 5.799 16 Si 1.042 2.958 17 H -0.274 1.274 18 H -0.271 1.271 19 H -0.280 1.280 20 S 0.120 5.880 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.180 0.820 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 1.186 -3.915 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.337 4.337 3 C -0.157 4.157 4 C -0.189 4.189 5 C -0.150 4.150 6 C -0.184 4.184 7 C -0.102 4.102 8 O -0.088 6.088 9 C -0.264 4.264 10 C -0.078 4.078 11 C 0.048 3.952 12 C -0.564 4.564 13 H 0.089 0.911 14 C -0.170 4.170 15 N -0.423 5.423 16 Si 0.867 3.133 17 H -0.199 1.199 18 H -0.196 1.196 19 H -0.206 1.206 20 S 0.387 5.613 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.141 0.859 25 H 0.142 0.858 26 H 0.197 0.803 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.656 -0.195 -3.143 6.473 hybrid contribution 1.570 1.554 -0.766 2.338 sum -4.086 1.360 -3.908 5.815 Atomic orbital electron populations 1.20167 0.89002 1.01982 1.01812 1.24340 0.99196 0.96906 1.13262 1.19641 0.92974 0.98188 1.04877 1.20005 0.95526 0.95254 1.08152 1.21842 0.94610 0.94540 1.04003 1.19449 0.90718 1.06773 1.01415 1.23305 0.85124 0.99884 1.01861 1.83350 1.35683 1.44409 1.45372 1.22194 0.96139 1.07334 1.00745 1.19536 0.94344 0.94605 0.99266 1.18867 0.89762 0.92360 0.94161 1.19444 1.19689 1.01183 1.16053 0.91127 1.26459 0.98731 0.96335 0.95486 1.70483 1.33015 1.06570 1.32195 0.83959 0.76397 0.75970 0.76983 1.19910 1.19633 1.20574 1.84072 0.96706 1.08894 1.71601 0.92156 0.91417 0.91643 0.85859 0.85762 0.80340 0.93777 0.93655 0.91341 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.37 36.01 0.37 -0.66 16 2 C -0.22 -4.15 6.51 -35.95 -0.23 -4.39 16 3 C -0.13 -2.39 10.03 -41.29 -0.41 -2.80 16 4 C -0.16 -3.37 10.10 -40.85 -0.41 -3.78 16 5 C -0.03 -0.74 3.79 -36.89 -0.14 -0.88 16 6 C -0.18 -4.44 5.34 -102.95 -0.55 -4.99 16 7 C -0.03 -0.67 11.99 29.76 0.36 -0.32 16 8 O -0.19 -4.53 10.50 7.30 0.08 -4.45 16 9 C -0.22 -5.42 7.46 -34.10 -0.25 -5.68 16 10 C -0.02 -0.43 10.21 36.01 0.37 -0.06 16 11 C 0.05 1.39 5.35 -104.57 -0.56 0.83 16 12 C -0.53 -14.49 8.99 -37.91 -0.34 -14.84 16 13 H 0.07 1.90 7.96 -52.49 -0.42 1.49 16 14 C 0.05 1.34 3.68 -17.33 -0.06 1.28 16 15 N -0.80 -21.73 11.83 55.54 0.66 -21.07 16 16 Si 1.04 23.20 30.00 -169.99 -5.10 18.11 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 20 S 0.12 2.61 22.03 -107.50 -2.37 0.24 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 25 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 26 H 0.18 3.22 8.06 -52.49 -0.42 2.80 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 30 H 0.29 8.27 6.84 -40.82 -0.28 7.99 16 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -29.16 277.26 -7.72 -36.88 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.29 Total: 2.40 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: -1.87 Total: -36.28 kcal Atomic # 7 Polarization: -21.73 SS G_CDS: 0.66 Total: -21.07 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.08 Total: -4.45 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.10 Total: 18.11 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.37 Total: 0.24 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.16 -7.72 -36.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259852704.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.588 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds