Wall clock time and date at job start Mon Mar 30 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33558 * 125.11266 * 2 1 4 4 C 1.38043 * 115.06923 * 179.75034 * 3 2 1 5 5 C 1.34863 * 114.67199 * 0.42640 * 4 3 2 6 6 C 1.47758 * 125.27526 * 179.86303 * 5 4 3 7 7 C 1.35520 * 127.12164 * 309.89655 * 6 5 4 8 8 O 1.34202 * 109.42843 * 180.25128 * 7 6 5 9 9 C 1.33805 * 111.33836 * 359.73880 * 8 7 6 10 10 C 1.50704 * 125.86543 * 179.97438 * 9 8 7 11 11 C 1.38806 * 108.25820 * 359.97438 * 9 8 7 12 12 C 1.41112 * 127.38668 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00388 * 327.73878 * 12 11 9 14 14 C 1.39805 * 120.00191 * 147.73812 * 12 11 9 15 15 N 1.30988 * 119.99310 * 335.41641 * 14 12 11 16 16 Si 1.86792 * 120.00016 * 155.13782 * 14 12 11 17 17 H 1.48510 * 109.46812 * 180.27863 * 16 14 12 18 18 H 1.48501 * 109.47362 * 300.27580 * 16 14 12 19 19 H 1.48498 * 109.47468 * 60.28081 * 16 14 12 20 20 S 1.75858 * 125.10456 * 179.97438 * 2 1 3 21 21 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46511 * 300.00211 * 1 2 3 23 23 H 1.09001 * 109.46769 * 59.99711 * 1 2 3 24 24 H 1.07994 * 122.46476 * 359.97438 * 3 2 1 25 25 H 1.08000 * 122.66741 * 180.25513 * 4 3 2 26 26 H 1.07995 * 125.28428 * 0.02562 * 7 6 5 27 27 H 1.08991 * 109.46882 * 264.96034 * 10 9 8 28 28 H 1.08998 * 109.47274 * 24.96940 * 10 9 8 29 29 H 1.09001 * 109.46553 * 144.96567 * 10 9 8 30 30 H 0.97001 * 120.00140 * 353.90381 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2752 1.0925 0.0000 4 6 3.6345 0.8518 0.0054 5 6 3.9751 -0.4531 0.0008 6 6 5.3578 -0.9741 0.0021 7 6 6.3696 -0.6104 -0.8228 8 8 7.4715 -1.3113 -0.5136 9 6 7.2470 -2.1457 0.5080 10 6 8.2554 -3.0840 1.1196 11 6 5.9259 -1.9986 0.9075 12 6 5.2642 -2.6836 1.9487 13 1 5.5381 -3.7012 2.1852 14 6 4.2541 -2.0451 2.6744 15 7 4.2302 -0.7378 2.7523 16 14 2.9344 -3.0559 3.5262 17 1 1.9839 -2.1476 4.2168 18 1 2.2026 -3.8646 2.5184 19 1 3.5673 -3.9590 4.5207 20 16 2.5183 -1.4387 0.0006 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8633 2.0908 -0.0004 25 1 4.3670 1.6454 0.0101 26 1 6.2991 0.1262 -1.6094 27 1 8.1554 -4.0703 0.6666 28 1 9.2609 -2.7027 0.9420 29 1 8.0789 -3.1575 2.1927 30 1 4.9600 -0.2164 2.3826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259852704.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:05 Heat of formation + Delta-G solvation = 4.829365 kcal Electronic energy + Delta-G solvation = -15744.861080 eV Core-core repulsion = 13210.873081 eV Total energy + Delta-G solvation = -2533.987999 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.47738 -38.62310 -36.14418 -33.61196 -32.71241 -31.47499 -28.52190 -26.80489 -26.01383 -23.97477 -22.12760 -21.26822 -19.32229 -18.92004 -17.57722 -16.97217 -16.51591 -15.99835 -15.64861 -15.07745 -14.79805 -14.59337 -13.91685 -13.73346 -13.62916 -13.48636 -13.32903 -13.18417 -13.08677 -12.63303 -12.36578 -12.04542 -11.92638 -11.51777 -11.46431 -10.73319 -10.26748 -9.25348 -9.17547 -8.80479 -8.70234 -6.24197 0.11443 0.83575 1.16203 1.37070 1.47304 1.57913 1.71518 1.91856 2.26325 2.39033 2.60549 3.24726 4.07442 4.11627 4.27066 4.49714 4.56235 4.67932 4.81338 4.83734 4.84341 4.88393 5.05790 5.14350 5.23035 5.39888 5.44654 5.70836 5.76492 5.85555 6.03850 6.13524 6.62901 6.97154 7.13658 8.32421 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.011801 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.109431 B = 2372.037152 C = 3355.187343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.200 4.200 3 C -0.138 4.138 4 C -0.154 4.154 5 C -0.065 4.065 6 C -0.197 4.197 7 C -0.026 4.026 8 O -0.194 6.194 9 C -0.229 4.229 10 C -0.019 4.019 11 C 0.010 3.990 12 C -0.559 4.559 13 H 0.058 0.942 14 C 0.029 3.971 15 N -0.812 5.812 16 Si 1.072 2.928 17 H -0.271 1.271 18 H -0.260 1.260 19 H -0.263 1.263 20 S 0.071 5.929 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.158 0.842 25 H 0.133 0.867 26 H 0.221 0.779 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 1.998 -4.375 7.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.318 4.318 3 C -0.168 4.168 4 C -0.184 4.184 5 C -0.182 4.182 6 C -0.201 4.201 7 C -0.097 4.097 8 O -0.093 6.093 9 C -0.276 4.276 10 C -0.076 4.076 11 C 0.007 3.993 12 C -0.590 4.590 13 H 0.076 0.924 14 C -0.188 4.188 15 N -0.435 5.435 16 Si 0.892 3.108 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.188 1.188 20 S 0.338 5.662 21 H 0.085 0.915 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.176 0.824 25 H 0.151 0.849 26 H 0.238 0.762 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.912 0.614 -3.611 7.822 hybrid contribution 1.991 1.365 -0.709 2.516 sum -4.921 1.979 -4.320 6.840 Atomic orbital electron populations 1.20357 0.85661 1.03168 1.03914 1.24893 1.01101 0.94953 1.10832 1.19969 0.92053 0.99891 1.04883 1.20313 0.96972 0.94682 1.06415 1.21841 0.94078 0.95377 1.06899 1.19776 0.92304 1.06577 1.01440 1.24056 0.84082 0.99644 1.01903 1.83365 1.36313 1.44501 1.45140 1.22939 0.96700 1.07377 1.00599 1.19619 0.94690 0.94583 0.98666 1.19307 0.90920 0.94019 0.95040 1.19524 1.21310 1.00878 1.17267 0.92352 1.27413 0.99745 0.96468 0.95212 1.70586 1.32565 1.06974 1.33414 0.83601 0.74840 0.75429 0.76929 1.19577 1.18481 1.18825 1.84108 0.97802 1.11504 1.72783 0.91532 0.89897 0.88658 0.82424 0.84926 0.76225 0.92342 0.91141 0.91898 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.84 10.37 71.24 0.74 -1.10 16 2 C -0.20 -7.10 6.51 24.62 0.16 -6.94 16 3 C -0.14 -4.90 10.03 21.16 0.21 -4.68 16 4 C -0.15 -6.29 10.10 21.45 0.22 -6.08 16 5 C -0.06 -2.99 3.79 24.01 0.09 -2.89 16 6 C -0.20 -9.85 5.34 -18.78 -0.10 -9.95 16 7 C -0.03 -1.16 11.99 67.19 0.81 -0.35 16 8 O -0.19 -9.21 10.50 3.20 0.03 -9.18 16 9 C -0.23 -11.52 7.46 25.82 0.19 -11.33 16 10 C -0.02 -0.78 10.21 71.24 0.73 -0.05 16 11 C 0.01 0.57 5.35 -19.83 -0.11 0.46 16 12 C -0.56 -31.21 8.99 23.35 0.21 -31.00 16 13 H 0.06 3.26 7.96 -2.91 -0.02 3.24 16 14 C 0.03 1.52 3.68 85.20 0.31 1.83 16 15 N -0.81 -44.71 11.83 21.81 0.26 -44.46 16 16 Si 1.07 46.56 30.00 68.60 2.06 48.62 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 20 S 0.07 3.09 22.03 -56.49 -1.24 1.84 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 25 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 26 H 0.22 7.51 8.06 -2.91 -0.02 7.49 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.06 2.62 8.08 -2.39 -0.02 2.60 16 30 H 0.27 15.93 6.84 -92.71 -0.63 15.30 16 Total: -1.00 -63.77 277.26 5.84 -57.93 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.28 Total: 17.33 kcal Atomic # 6 Polarization: -75.55 SS G_CDS: 3.46 Total: -72.09 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.26 Total: -44.46 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.03 Total: -9.18 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.06 Total: 48.62 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.24 Total: 1.84 kcal Total: -63.77 5.84 -57.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259852704.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.757 kcal (2) G-P(sol) polarization free energy of solvation -63.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds