Wall clock time and date at job start Mon Mar 30 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00058 * 2 1 4 4 H 1.48499 * 109.47323 * 239.72865 * 3 2 1 5 5 H 1.48498 * 109.47130 * 359.72851 * 3 2 1 6 6 H 1.48498 * 109.47056 * 119.72716 * 3 2 1 7 7 C 1.37878 * 119.99640 * 179.73174 * 2 1 3 8 8 H 1.07999 * 119.99702 * 175.49618 * 7 2 1 9 9 C 1.50695 * 120.00331 * 355.48617 * 7 2 1 10 10 H 1.09005 * 109.48058 * 35.20925 * 9 7 2 11 11 C 1.52864 * 109.48138 * 275.18901 * 9 7 2 12 12 C 1.53299 * 109.79979 * 187.30670 * 11 9 7 13 13 C 1.52815 * 108.62555 * 67.49624 * 12 11 9 14 14 C 1.53154 * 113.91749 * 85.04655 * 13 12 11 15 15 C 1.53892 * 86.88586 * 90.19568 * 14 13 12 16 16 C 1.53134 * 113.96003 * 183.65957 * 13 12 11 17 17 C 1.50888 * 111.77952 * 314.40598 * 13 12 11 18 18 S 1.75606 * 126.23760 * 193.45099 * 17 13 12 19 19 C 1.75756 * 91.06218 * 180.08924 * 18 17 13 20 20 C 1.32973 * 109.60491 * 359.97082 * 19 18 17 21 21 C 1.34928 * 123.70338 * 13.48624 * 17 13 12 22 22 H 0.96999 * 119.99920 * 185.24528 * 1 2 3 23 23 H 1.09000 * 109.41338 * 307.38167 * 11 9 7 24 24 H 1.08999 * 109.41836 * 67.18942 * 11 9 7 25 25 H 1.09000 * 109.59228 * 307.76375 * 12 11 9 26 26 H 1.08995 * 109.75618 * 187.33544 * 12 11 9 27 27 H 1.09005 * 113.64787 * 204.69236 * 14 13 12 28 28 H 1.08997 * 113.64697 * 335.69216 * 14 13 12 29 29 H 1.09005 * 113.59771 * 270.38266 * 15 14 13 30 30 H 1.08997 * 113.66869 * 139.55083 * 15 14 13 31 31 H 1.09001 * 113.64443 * 24.34267 * 16 13 12 32 32 H 1.09000 * 113.64437 * 155.25735 * 16 13 12 33 33 H 1.08005 * 125.20306 * 179.97438 * 19 18 17 34 34 H 1.07993 * 122.13430 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1079 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0066 6 1 3.0979 1.6992 1.2158 7 6 2.0045 -1.1941 0.0056 8 1 3.0820 -1.1959 -0.0678 9 6 1.2545 -2.4966 0.1144 10 1 0.3072 -2.4163 -0.4188 11 6 0.9859 -2.8088 1.5865 12 6 0.3875 -4.2140 1.7185 13 6 1.4527 -5.2370 1.3261 14 6 2.3950 -5.6222 2.4703 15 6 1.3969 -6.7454 2.8023 16 6 0.9551 -6.6852 1.3294 17 6 2.1676 -4.8421 0.0574 18 16 3.2092 -5.8724 -0.9109 19 6 3.4991 -4.5650 -2.0492 20 6 2.8330 -3.4810 -1.6627 21 6 2.0873 -3.6143 -0.4962 22 1 -0.4850 -0.8365 0.0768 23 1 1.9215 -2.7599 2.1438 24 1 0.2860 -2.0772 1.9902 25 1 -0.4726 -4.3087 1.0557 26 1 0.0762 -4.3865 2.7488 27 1 3.3660 -5.9856 2.1336 28 1 2.4724 -4.8621 3.2477 29 1 0.6188 -6.4444 3.5039 30 1 1.8729 -7.6867 3.0769 31 1 -0.1222 -6.7777 1.1919 32 1 1.5241 -7.3444 0.6736 33 1 4.1230 -4.6317 -2.9283 34 1 2.8682 -2.5562 -2.2194 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259871540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:44 Heat of formation + Delta-G solvation = 30.183581 kcal Electronic energy + Delta-G solvation = -16282.856800 eV Core-core repulsion = 13885.801336 eV Total energy + Delta-G solvation = -2397.055463 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88151 -37.05923 -34.10854 -31.93321 -28.47240 -28.03776 -25.52486 -24.26903 -22.83917 -22.25541 -20.46852 -18.55487 -17.71687 -16.75657 -16.09349 -14.95965 -14.75057 -13.92375 -13.73966 -13.53680 -13.07633 -12.82717 -12.59613 -12.11100 -11.86862 -11.37205 -11.33945 -11.05772 -10.95093 -10.71785 -10.52232 -10.47016 -10.21001 -10.07963 -9.87181 -9.76653 -9.27066 -8.56081 -8.42240 -7.87664 -7.46931 -6.35543 -4.08085 1.68764 2.28545 2.65041 3.42427 3.44135 3.57054 3.62807 4.51643 4.83438 4.90135 4.91229 5.13509 5.35075 5.52353 5.68355 5.74238 5.81286 5.90824 6.02577 6.04465 6.14437 6.23369 6.30496 6.35281 6.41264 6.56224 6.67449 6.73327 6.88095 6.88656 7.18986 7.31565 7.39770 7.64688 8.20836 8.43136 8.85740 9.62373 11.01087 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.008425 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.589968 B = 3322.683727 C = 4059.470406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 1.065 2.935 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.585 4.585 8 H 0.050 0.950 9 C 0.085 3.915 10 H 0.045 0.955 11 C -0.104 4.104 12 C -0.094 4.094 13 C 0.005 3.995 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.134 4.134 17 C -0.187 4.187 18 S 0.031 5.969 19 C -0.235 4.235 20 C -0.098 4.098 21 C -0.054 4.054 22 H 0.270 0.730 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 -11.389 1.986 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.182 4.182 3 Si 0.894 3.106 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.624 4.624 8 H 0.069 0.931 9 C 0.064 3.936 10 H 0.063 0.937 11 C -0.142 4.142 12 C -0.133 4.133 13 C 0.003 3.997 14 C -0.166 4.166 15 C -0.176 4.176 16 C -0.172 4.172 17 C -0.302 4.302 18 S 0.296 5.704 19 C -0.369 4.369 20 C -0.128 4.128 21 C -0.065 4.065 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.171 0.829 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.640 -11.257 1.969 11.993 hybrid contribution -0.036 -0.218 -0.198 0.297 sum 3.604 -11.475 1.770 12.158 Atomic orbital electron populations 1.70807 1.06792 1.30936 1.46219 1.25792 0.96491 1.02423 0.93538 0.83587 0.74944 0.75505 0.76581 1.21493 1.20809 1.21436 1.21841 0.94495 0.90833 1.55207 0.93141 1.17962 0.94423 0.90505 0.90710 0.93738 1.21715 0.99643 0.92882 1.00010 1.21480 0.96272 0.95649 0.99879 1.19993 0.95182 0.94257 0.90311 1.22962 0.97480 0.98116 0.98039 1.22853 0.99344 0.98757 0.96695 1.23020 1.01109 0.96334 0.96704 1.24433 1.06693 0.96883 1.02239 1.83456 1.48803 1.17251 1.20921 1.25214 1.09724 0.96980 1.04965 1.20226 0.96684 0.98700 0.97210 1.20403 0.97775 0.94385 0.93941 0.91853 0.93012 0.92481 0.92129 0.92392 0.90361 0.91096 0.90174 0.91815 0.91315 0.90372 0.82906 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.57 13.63 55.43 0.76 -25.82 16 2 C 0.02 0.60 5.46 -17.82 -0.10 0.51 16 3 Si 1.07 24.71 29.91 -169.99 -5.08 19.63 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.59 -15.83 7.62 -34.44 -0.26 -16.09 16 8 H 0.05 1.39 7.72 -52.49 -0.41 0.99 16 9 C 0.08 2.07 2.12 -92.27 -0.20 1.88 16 10 H 0.04 1.19 6.68 -51.93 -0.35 0.84 16 11 C -0.10 -2.29 5.12 -26.65 -0.14 -2.43 16 12 C -0.09 -1.70 5.04 -26.67 -0.13 -1.83 16 13 C 0.00 0.08 0.94 -155.52 -0.15 -0.06 16 14 C -0.13 -1.94 7.20 -26.19 -0.19 -2.12 16 15 C -0.14 -1.76 7.75 -25.80 -0.20 -1.96 16 16 C -0.13 -1.91 7.20 -26.19 -0.19 -2.10 16 17 C -0.19 -3.61 5.57 -35.39 -0.20 -3.81 16 18 S 0.03 0.53 22.32 -107.50 -2.40 -1.87 16 19 C -0.23 -4.16 11.20 28.91 0.32 -3.83 16 20 C -0.10 -2.03 9.34 -41.09 -0.38 -2.41 16 21 C -0.05 -1.18 5.42 -104.76 -0.57 -1.75 16 22 H 0.27 7.80 6.66 -40.82 -0.27 7.53 16 23 H 0.05 1.16 8.11 -51.93 -0.42 0.74 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.92 7.48 -51.93 -0.39 0.53 16 27 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 28 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 29 H 0.08 0.95 7.77 -51.93 -0.40 0.54 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.08 1.10 7.21 -51.93 -0.37 0.73 16 33 H 0.15 2.25 8.06 -52.48 -0.42 1.82 16 34 H 0.14 2.95 7.84 -52.49 -0.41 2.54 16 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -28.39 283.40 -9.60 -37.99 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.77 Total: 1.81 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: -2.37 Total: -36.02 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.76 Total: -25.82 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.40 Total: -1.87 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.39 -9.60 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.178 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds