Wall clock time and date at job start Mon Mar 30 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00058 * 2 1 4 4 H 1.48499 * 109.47323 * 239.72865 * 3 2 1 5 5 H 1.48498 * 109.47130 * 359.72851 * 3 2 1 6 6 H 1.48498 * 109.47056 * 119.72716 * 3 2 1 7 7 C 1.37878 * 119.99640 * 179.73174 * 2 1 3 8 8 H 1.07999 * 119.99702 * 175.49618 * 7 2 1 9 9 C 1.50695 * 120.00331 * 355.48617 * 7 2 1 10 10 H 1.09005 * 109.48058 * 35.20925 * 9 7 2 11 11 C 1.52864 * 109.48138 * 275.18901 * 9 7 2 12 12 C 1.53299 * 109.79979 * 187.30670 * 11 9 7 13 13 C 1.52815 * 108.62555 * 67.49624 * 12 11 9 14 14 C 1.53154 * 113.91749 * 85.04655 * 13 12 11 15 15 C 1.53892 * 86.88586 * 90.19568 * 14 13 12 16 16 C 1.53134 * 113.96003 * 183.65957 * 13 12 11 17 17 C 1.50888 * 111.77952 * 314.40598 * 13 12 11 18 18 S 1.75606 * 126.23760 * 193.45099 * 17 13 12 19 19 C 1.75756 * 91.06218 * 180.08924 * 18 17 13 20 20 C 1.32973 * 109.60491 * 359.97082 * 19 18 17 21 21 C 1.34928 * 123.70338 * 13.48624 * 17 13 12 22 22 H 0.96999 * 119.99920 * 185.24528 * 1 2 3 23 23 H 1.09000 * 109.41338 * 307.38167 * 11 9 7 24 24 H 1.08999 * 109.41836 * 67.18942 * 11 9 7 25 25 H 1.09000 * 109.59228 * 307.76375 * 12 11 9 26 26 H 1.08995 * 109.75618 * 187.33544 * 12 11 9 27 27 H 1.09005 * 113.64787 * 204.69236 * 14 13 12 28 28 H 1.08997 * 113.64697 * 335.69216 * 14 13 12 29 29 H 1.09005 * 113.59771 * 270.38266 * 15 14 13 30 30 H 1.08997 * 113.66869 * 139.55083 * 15 14 13 31 31 H 1.09001 * 113.64443 * 24.34267 * 16 13 12 32 32 H 1.09000 * 113.64437 * 155.25735 * 16 13 12 33 33 H 1.08005 * 125.20306 * 179.97438 * 19 18 17 34 34 H 1.07993 * 122.13430 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1079 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0066 6 1 3.0979 1.6992 1.2158 7 6 2.0045 -1.1941 0.0056 8 1 3.0820 -1.1959 -0.0678 9 6 1.2545 -2.4966 0.1144 10 1 0.3072 -2.4163 -0.4188 11 6 0.9859 -2.8088 1.5865 12 6 0.3875 -4.2140 1.7185 13 6 1.4527 -5.2370 1.3261 14 6 2.3950 -5.6222 2.4703 15 6 1.3969 -6.7454 2.8023 16 6 0.9551 -6.6852 1.3294 17 6 2.1676 -4.8421 0.0574 18 16 3.2092 -5.8724 -0.9109 19 6 3.4991 -4.5650 -2.0492 20 6 2.8330 -3.4810 -1.6627 21 6 2.0873 -3.6143 -0.4962 22 1 -0.4850 -0.8365 0.0768 23 1 1.9215 -2.7599 2.1438 24 1 0.2860 -2.0772 1.9902 25 1 -0.4726 -4.3087 1.0557 26 1 0.0762 -4.3865 2.7488 27 1 3.3660 -5.9856 2.1336 28 1 2.4724 -4.8621 3.2477 29 1 0.6188 -6.4444 3.5039 30 1 1.8729 -7.6867 3.0769 31 1 -0.1222 -6.7777 1.1919 32 1 1.5241 -7.3444 0.6736 33 1 4.1230 -4.6317 -2.9283 34 1 2.8682 -2.5562 -2.2194 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:44 Heat of formation + Delta-G solvation = 16.565927 kcal Electronic energy + Delta-G solvation = -16283.447305 eV Core-core repulsion = 13885.801336 eV Total energy + Delta-G solvation = -2397.645969 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25155 -38.53730 -35.95042 -33.74339 -29.99528 -29.74014 -26.68699 -26.08508 -24.39765 -23.81751 -22.07426 -19.87420 -19.51353 -18.38369 -17.67553 -16.44944 -16.10785 -15.64912 -15.27171 -15.21231 -14.62337 -14.42123 -13.99370 -13.70250 -13.20554 -13.01178 -12.88688 -12.73161 -12.60605 -12.30103 -12.01657 -11.96917 -11.91720 -11.55721 -11.26759 -11.19510 -10.92023 -10.52750 -10.47538 -9.31856 -9.04910 -8.53623 -6.29109 0.18201 0.84510 1.14168 1.51163 1.58429 1.77899 1.94592 2.57097 3.20291 3.58886 3.71713 3.73749 3.92837 4.11354 4.27902 4.40921 4.50225 4.57764 4.68982 4.79267 4.80782 4.85937 4.88142 4.99944 5.05121 5.10529 5.16003 5.20064 5.31791 5.43914 5.53317 5.57329 5.64902 5.91698 6.15734 6.23415 6.67524 7.48373 8.79561 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.008425 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.589968 B = 3322.683727 C = 4059.470406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.028 4.028 3 Si 1.109 2.891 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.589 4.589 8 H 0.039 0.961 9 C 0.082 3.918 10 H 0.007 0.993 11 C -0.094 4.094 12 C -0.085 4.085 13 C -0.014 4.014 14 C -0.130 4.130 15 C -0.121 4.121 16 C -0.128 4.128 17 C -0.190 4.190 18 S 0.110 5.890 19 C -0.225 4.225 20 C -0.133 4.133 21 C -0.098 4.098 22 H 0.258 0.742 23 H 0.042 0.958 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.186 0.814 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -13.987 2.613 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.226 4.226 3 Si 0.931 3.069 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.627 4.627 8 H 0.057 0.943 9 C 0.062 3.938 10 H 0.025 0.975 11 C -0.132 4.132 12 C -0.124 4.124 13 C -0.016 4.016 14 C -0.167 4.167 15 C -0.158 4.158 16 C -0.165 4.165 17 C -0.306 4.306 18 S 0.375 5.625 19 C -0.360 4.360 20 C -0.164 4.164 21 C -0.110 4.110 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.203 0.797 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.016 -13.878 2.595 14.983 hybrid contribution -0.411 0.479 -0.437 0.768 sum 4.605 -13.399 2.158 14.332 Atomic orbital electron populations 1.70912 1.07673 1.30266 1.48702 1.27120 0.96586 1.05913 0.92989 0.83030 0.74218 0.71896 0.77723 1.19897 1.20907 1.19832 1.22105 0.94054 0.92461 1.54114 0.94275 1.17804 0.93011 0.91021 0.91988 0.97491 1.21472 0.98696 0.95136 0.97913 1.21371 0.96287 0.93372 1.01339 1.20231 0.95602 0.95624 0.90153 1.22993 0.97825 0.99064 0.96862 1.22808 0.98569 0.98771 0.95674 1.23015 1.01713 0.93573 0.98214 1.24896 1.06233 0.96662 1.02825 1.83125 1.46236 1.14633 1.18492 1.25616 1.08209 0.96375 1.05766 1.20123 0.99077 0.99413 0.97764 1.20227 0.99906 0.95092 0.95734 0.93151 0.93953 0.95041 0.92934 0.89760 0.90078 0.91649 0.89049 0.89348 0.90562 0.89713 0.79674 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.63 21.45 0.29 -57.14 16 2 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 3 Si 1.11 50.97 29.91 68.60 2.05 53.02 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.59 -33.48 7.62 25.60 0.20 -33.28 16 8 H 0.04 2.25 7.72 -2.91 -0.02 2.23 16 9 C 0.08 4.27 2.12 -11.86 -0.03 4.24 16 10 H 0.01 0.42 6.68 -2.38 -0.02 0.40 16 11 C -0.09 -4.31 5.12 30.65 0.16 -4.15 16 12 C -0.09 -3.05 5.04 30.63 0.15 -2.90 16 13 C -0.01 -0.44 0.94 -52.84 -0.05 -0.49 16 14 C -0.13 -3.53 7.20 30.95 0.22 -3.31 16 15 C -0.12 -2.53 7.75 31.20 0.24 -2.29 16 16 C -0.13 -3.17 7.20 30.94 0.22 -2.95 16 17 C -0.19 -7.13 5.57 24.98 0.14 -7.00 16 18 S 0.11 3.36 22.32 -56.49 -1.26 2.10 16 19 C -0.23 -7.57 11.20 66.65 0.75 -6.82 16 20 C -0.13 -5.66 9.34 21.30 0.20 -5.46 16 21 C -0.10 -4.45 5.42 -19.95 -0.11 -4.56 16 22 H 0.26 15.96 6.66 -92.71 -0.62 15.34 16 23 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 24 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.56 7.48 -2.39 -0.02 2.54 16 27 H 0.08 2.16 8.09 -2.38 -0.02 2.14 16 28 H 0.06 1.85 8.09 -2.39 -0.02 1.83 16 29 H 0.09 1.75 7.77 -2.38 -0.02 1.73 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 32 H 0.08 2.01 7.21 -2.39 -0.02 1.99 16 33 H 0.19 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.12 5.32 7.84 -2.91 -0.02 5.30 16 Total: -1.00 -64.48 283.40 4.87 -59.61 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.23 Total: 12.53 kcal Atomic # 6 Polarization: -72.69 SS G_CDS: 2.56 Total: -70.13 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.29 Total: -57.14 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.26 Total: 2.10 kcal Total: -64.48 4.87 -59.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.176 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds