Wall clock time and date at job start Mon Mar 30 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35323 * 126.12909 * 2 1 4 4 C 1.50696 * 126.03533 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46969 * 85.00715 * 4 3 2 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72505 * 6 5 4 9 9 N 1.31514 * 120.00481 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00365 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00213 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00116 * 10 8 6 14 14 C 1.39868 * 107.91820 * 180.28350 * 3 2 1 15 15 N 1.30831 * 108.20521 * 359.54719 * 14 3 2 16 16 N 1.34949 * 126.12799 * 180.02562 * 2 1 3 17 17 C 1.46499 * 126.03683 * 359.95868 * 16 2 1 18 18 F 1.39903 * 109.46885 * 89.99813 * 17 16 2 19 19 F 1.39895 * 109.47524 * 209.99941 * 17 16 2 20 20 F 1.39907 * 109.47159 * 330.00165 * 17 16 2 21 21 H 1.09005 * 109.46901 * 90.00483 * 1 2 3 22 22 H 1.09001 * 109.47623 * 210.00640 * 1 2 3 23 23 H 1.09007 * 109.47556 * 330.00515 * 1 2 3 24 24 H 1.09000 * 109.47664 * 325.00644 * 4 3 2 25 25 H 1.09002 * 109.46824 * 205.00114 * 4 3 2 26 26 H 1.09001 * 109.47671 * 59.99812 * 5 4 3 27 27 H 1.08998 * 109.47454 * 299.99809 * 5 4 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 29 29 H 1.08007 * 125.89180 * 179.73636 * 14 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5275 0.0005 5 6 1.5681 2.9741 1.4378 6 6 1.1071 4.4090 1.4385 7 1 1.0196 4.9484 0.5069 8 6 0.7921 5.0313 2.6277 9 7 0.3893 6.2833 2.6283 10 14 0.9361 4.0958 4.2382 11 1 2.3018 4.2739 4.7937 12 1 -0.0634 4.6175 5.2048 13 1 0.6843 2.6524 3.9964 14 6 3.6334 0.6559 -0.0066 15 7 3.6333 -0.6524 -0.0006 16 7 2.3026 -1.0900 -0.0005 17 6 1.8539 -2.4846 -0.0003 18 9 1.7103 -2.9284 -1.3192 19 9 2.7987 -3.2784 0.6586 20 9 0.6240 -2.5787 0.6599 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5138 24 1 0.9303 2.6158 -0.5884 25 1 2.6184 3.1587 -0.4339 26 1 2.4809 2.8860 2.0269 27 1 0.7929 2.3430 1.8723 28 1 0.1674 6.7210 3.4649 29 1 4.5083 1.2892 -0.0123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259901050.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:54 Heat of formation + Delta-G solvation = -92.527179 kcal Electronic energy + Delta-G solvation = -18129.190398 eV Core-core repulsion = 14638.663842 eV Total energy + Delta-G solvation = -3490.526556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.57701 -49.28191 -49.15317 -42.53067 -36.15803 -34.30405 -34.04006 -31.81807 -28.80726 -27.06647 -26.01621 -22.91777 -22.75387 -21.00073 -20.16515 -19.47953 -19.23951 -18.79229 -16.60398 -16.38594 -16.14522 -15.92265 -15.76395 -15.61048 -15.43732 -15.32147 -15.29378 -14.86374 -14.67658 -14.24183 -13.75676 -13.73259 -13.37510 -12.89934 -12.82978 -12.30412 -12.01552 -11.70054 -11.45072 -11.25192 -10.92232 -10.71306 -9.52881 -8.24501 -6.27135 0.07977 0.36606 1.38168 1.39876 1.50776 1.60781 1.62222 2.35224 2.39112 2.89118 3.11778 3.35820 3.76276 3.98764 4.25026 4.43109 4.58179 4.77187 4.82797 4.88338 5.03670 5.11719 5.30117 5.45803 5.60665 5.67827 5.74025 6.28749 6.34396 6.81836 7.37656 8.92081 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.035381 B = 0.005742 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.184477 B = 4874.867714 C = 5018.190147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.096 3.904 3 C -0.213 4.213 4 C -0.020 4.020 5 C -0.002 4.002 6 C -0.525 4.525 7 H 0.040 0.960 8 C 0.008 3.992 9 N -0.951 5.951 10 Si 0.943 3.057 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.250 1.250 14 C 0.088 3.912 15 N -0.299 5.299 16 N -0.458 5.458 17 C 0.703 3.297 18 F -0.152 7.152 19 F -0.146 7.146 20 F -0.140 7.140 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.265 0.735 29 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -18.770 -5.415 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.024 4.024 3 C -0.223 4.223 4 C -0.058 4.058 5 C -0.040 4.040 6 C -0.563 4.563 7 H 0.058 0.942 8 C -0.189 4.189 9 N -0.592 5.592 10 Si 0.767 3.233 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.174 1.174 14 C -0.101 4.101 15 N -0.116 5.116 16 N -0.255 5.255 17 C 0.567 3.433 18 F -0.134 7.134 19 F -0.128 7.128 20 F -0.121 7.121 21 H 0.123 0.877 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.516 -19.913 -5.306 20.761 hybrid contribution -0.482 0.685 0.792 1.153 sum 2.034 -19.228 -4.514 19.855 Atomic orbital electron populations 1.20960 0.84749 1.05851 1.05430 1.21376 0.96128 0.85190 0.99669 1.20395 0.92636 0.96342 1.12921 1.19753 1.00853 0.87903 0.97329 1.19480 0.95950 0.93873 0.94693 1.21509 1.43687 0.97425 0.93646 0.94167 1.25896 0.94500 0.95475 1.03010 1.70055 1.47773 1.13264 1.28141 0.85770 0.78264 0.80114 0.79142 1.19555 1.21221 1.17372 1.24632 0.99165 0.91247 0.95024 1.77478 0.93721 1.14076 1.26320 1.49432 1.07083 1.03761 1.65245 1.17242 0.74601 0.76345 0.75068 1.93325 1.95395 1.88910 1.35746 1.93294 1.65122 1.73520 1.80834 1.93256 1.42676 1.95271 1.80915 0.87709 0.88829 0.88821 0.91469 0.90976 0.96835 0.96511 0.92640 0.76039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 9.70 71.23 0.69 -1.91 15 2 C 0.10 2.78 6.83 41.40 0.28 3.06 15 3 C -0.21 -6.64 5.35 -20.14 -0.11 -6.75 15 4 C -0.02 -0.70 5.19 29.85 0.15 -0.55 15 5 C 0.00 -0.11 4.02 29.85 0.12 0.01 15 6 C -0.52 -28.86 9.66 25.60 0.25 -28.61 15 7 H 0.04 2.41 7.99 -2.91 -0.02 2.39 15 8 C 0.01 0.45 5.47 84.65 0.46 0.91 15 9 N -0.95 -58.51 13.96 21.45 0.30 -58.21 15 10 Si 0.94 43.65 27.47 68.60 1.88 45.54 15 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 13 H -0.25 -10.82 6.53 99.48 0.65 -10.17 15 14 C 0.09 2.50 11.96 85.24 1.02 3.52 15 15 N -0.30 -9.09 12.41 -57.02 -0.71 -9.80 15 16 N -0.46 -13.14 3.90 -348.96 -1.36 -14.50 15 17 C 0.70 16.83 4.04 127.77 0.52 17.35 15 18 F -0.15 -3.41 17.51 44.97 0.79 -2.63 15 19 F -0.15 -3.58 17.34 44.97 0.78 -2.80 15 20 F -0.14 -2.96 14.48 44.97 0.65 -2.30 15 21 H 0.10 1.99 8.14 -2.38 -0.02 1.97 15 22 H 0.09 1.91 5.59 -2.39 -0.01 1.89 15 23 H 0.09 2.41 7.51 -2.38 -0.02 2.39 15 24 H 0.07 2.33 8.01 -2.39 -0.02 2.31 15 25 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.01 0.59 7.58 -2.39 -0.02 0.57 15 27 H 0.02 0.73 6.81 -2.39 -0.02 0.71 15 28 H 0.26 15.26 8.31 -92.71 -0.77 14.49 15 29 H 0.22 4.78 8.06 -2.91 -0.02 4.76 15 Total: -1.00 -64.56 266.19 6.84 -57.72 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: 1.12 Total: -0.03 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 3.39 Total: -12.97 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -1.77 Total: -82.51 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 2.22 Total: -7.74 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.54 kcal Total: -64.56 6.84 -57.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901050.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.808 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds