Wall clock time and date at job start Mon Mar 30 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00460 * 2 1 4 4 H 1.48502 * 109.46760 * 269.99991 * 3 2 1 5 5 H 1.48502 * 109.46820 * 29.99404 * 3 2 1 6 6 H 1.48494 * 109.47470 * 149.99635 * 3 2 1 7 7 C 1.37880 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00094 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99953 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.46848 * 179.97438 * 9 7 2 11 11 N 1.30460 * 125.65984 * 269.96833 * 10 9 7 12 12 C 1.33796 * 109.44860 * 180.02562 * 11 10 9 13 13 C 1.36430 * 107.71186 * 0.02562 * 12 11 10 14 14 S 1.75671 * 143.28822 * 179.97438 * 13 12 11 15 15 C 1.76578 * 90.91654 * 180.02562 * 14 13 12 16 16 C 1.31432 * 110.29731 * 359.97438 * 15 14 13 17 17 N 1.35312 * 107.45447 * 0.02562 * 13 12 11 18 18 C 1.52953 * 110.10697 * 179.97438 * 16 15 14 19 19 C 1.54163 * 105.02133 * 342.47419 * 18 16 15 20 20 C 1.52315 * 138.68699 * 179.90049 * 15 14 13 21 21 H 0.97001 * 119.99702 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47174 * 59.99791 * 9 7 2 23 23 H 1.09000 * 109.47009 * 299.99605 * 9 7 2 24 24 H 1.08007 * 126.14509 * 179.97438 * 12 11 10 25 25 H 1.09002 * 110.34782 * 101.39196 * 18 16 15 26 26 H 1.09003 * 110.35107 * 223.55734 * 18 16 15 27 27 H 1.09002 * 111.03737 * 144.38798 * 19 18 16 28 28 H 1.08995 * 111.03705 * 268.32770 * 19 18 16 29 29 H 1.09004 * 110.39125 * 316.25087 * 20 15 14 30 30 H 1.09003 * 110.38999 * 78.51625 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0023 11 7 4.2673 -3.3312 1.0628 12 6 4.6959 -4.5426 0.6903 13 6 4.7086 -4.5771 -0.6735 14 16 5.0721 -5.6023 -2.0530 15 6 4.6160 -4.3116 -3.1684 16 6 4.2375 -3.2446 -2.5007 17 7 4.2826 -3.3707 -1.1140 18 6 3.8442 -2.1294 -3.4708 19 6 4.4659 -2.5370 -4.8213 20 6 4.5345 -4.0734 -4.6705 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8752 -0.6806 -0.8889 24 1 4.9815 -5.3482 1.3506 25 1 2.7593 -2.0667 -3.5564 26 1 4.2532 -1.1755 -3.1377 27 1 3.8193 -2.2524 -5.6515 28 1 5.4616 -2.1094 -4.9386 29 1 5.4237 -4.4635 -5.1658 30 1 3.6378 -4.5381 -5.0806 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259902981.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:24 Heat of formation + Delta-G solvation = 91.101631 kcal Electronic energy + Delta-G solvation = -15615.574380 eV Core-core repulsion = 13117.620178 eV Total energy + Delta-G solvation = -2497.954202 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.15092 -38.51800 -33.91286 -33.28413 -30.93202 -28.66440 -27.73360 -27.26126 -23.06689 -22.45573 -21.51035 -19.68706 -18.50382 -17.71421 -17.00302 -15.98299 -15.10768 -14.91901 -14.38360 -14.11455 -13.33300 -13.03943 -12.87526 -12.68696 -12.31399 -12.07632 -11.88405 -11.68248 -11.21922 -10.96995 -10.77896 -10.70173 -10.46709 -10.12894 -9.69771 -9.61416 -9.41186 -8.69283 -8.59651 -6.79612 -6.17134 -4.18296 1.37438 1.45383 2.00632 2.61259 2.97904 3.19622 3.29841 3.32148 3.63098 4.31234 4.36407 4.57156 4.90624 5.09565 5.12405 5.26911 5.29609 5.40620 5.64116 5.64981 5.76035 5.82963 5.88451 6.10338 6.13274 6.52768 6.68832 6.83607 7.05871 7.44807 7.66334 8.36395 8.52628 8.85649 9.39782 10.95472 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.008410 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.987373 B = 3328.643119 C = 4112.737584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.064 3.936 10 C 0.283 3.717 11 N -0.465 5.465 12 C 0.016 3.984 13 C -0.107 4.107 14 S 0.114 5.886 15 C -0.225 4.225 16 C 0.083 3.917 17 N -0.398 5.398 18 C -0.055 4.055 19 C -0.114 4.114 20 C -0.034 4.034 21 H 0.266 0.734 22 H 0.056 0.944 23 H 0.029 0.971 24 H 0.174 0.826 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.549 -6.525 -10.394 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.555 4.555 8 H 0.091 0.909 9 C 0.025 3.975 10 C 0.020 3.980 11 N -0.179 5.179 12 C -0.142 4.142 13 C -0.330 4.330 14 S 0.372 5.628 15 C -0.343 4.343 16 C -0.026 4.026 17 N -0.076 5.076 18 C -0.094 4.094 19 C -0.153 4.153 20 C -0.073 4.073 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.192 0.808 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.762 -7.468 -9.759 16.334 hybrid contribution -0.182 1.754 -0.335 1.795 sum 10.580 -5.713 -10.094 15.699 Atomic orbital electron populations 1.69883 1.06207 1.27175 1.49794 1.24903 0.94762 0.98828 0.94227 0.86863 0.80681 0.83698 0.78740 1.19986 1.20800 1.18675 1.20746 0.87452 0.94963 1.52296 0.90870 1.18335 0.97820 0.82764 0.98560 1.24533 0.98927 0.97157 0.77389 1.70266 1.17613 1.03182 1.26886 1.21794 1.07221 0.96776 0.88386 1.24021 1.17737 0.91534 0.99731 1.83802 1.76035 1.12766 0.90214 1.24958 1.11577 0.96718 1.01056 1.20654 1.01518 0.99486 0.80934 1.43743 1.47305 1.11947 1.04576 1.21238 1.02818 0.95085 0.90287 1.22381 1.01879 0.94359 0.96659 1.20810 1.02854 0.96636 0.87039 0.92352 0.92633 0.95267 0.80850 0.88189 0.89666 0.89211 0.90294 0.90365 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.60 27.47 -169.99 -4.67 15.93 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.52 -14.67 9.65 -34.44 -0.33 -15.00 16 8 H 0.07 2.34 7.98 -52.48 -0.42 1.93 16 9 C 0.06 1.58 4.67 -29.03 -0.14 1.45 16 10 C 0.28 6.71 7.37 -153.20 -1.13 5.58 16 11 N -0.46 -10.89 11.22 -9.93 -0.11 -11.00 16 12 C 0.02 0.31 11.95 -17.35 -0.21 0.10 16 13 C -0.11 -2.09 7.83 -16.67 -0.13 -2.22 16 14 S 0.11 1.76 23.36 -107.50 -2.51 -0.75 16 15 C -0.22 -3.41 7.25 -35.33 -0.26 -3.67 16 16 C 0.08 1.49 7.63 -79.88 -0.61 0.88 16 17 N -0.40 -8.45 3.17 -54.39 -0.17 -8.62 16 18 C -0.05 -0.80 6.82 -26.15 -0.18 -0.98 16 19 C -0.11 -1.15 7.17 -25.32 -0.18 -1.33 16 20 C -0.03 -0.36 6.83 -26.28 -0.18 -0.54 16 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.06 1.37 7.20 -51.93 -0.37 1.00 16 23 H 0.03 0.67 7.32 -51.93 -0.38 0.29 16 24 H 0.17 2.76 8.06 -52.48 -0.42 2.33 16 25 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 270.04 15.07 4.07 4.07 Total: -1.00 -32.53 270.04 -9.35 -41.87 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.29 Total: -1.77 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.44 Total: -13.69 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.49 Total: -45.67 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.51 Total: -0.75 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.53 -9.35 -41.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902981.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.974 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds