Wall clock time and date at job start Mon Mar 30 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00460 * 2 1 4 4 H 1.48502 * 109.46760 * 269.99991 * 3 2 1 5 5 H 1.48502 * 109.46820 * 29.99404 * 3 2 1 6 6 H 1.48494 * 109.47470 * 149.99635 * 3 2 1 7 7 C 1.37880 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00094 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99953 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.46848 * 179.97438 * 9 7 2 11 11 N 1.30460 * 125.65984 * 269.96833 * 10 9 7 12 12 C 1.33796 * 109.44860 * 180.02562 * 11 10 9 13 13 C 1.36430 * 107.71186 * 0.02562 * 12 11 10 14 14 S 1.75671 * 143.28822 * 179.97438 * 13 12 11 15 15 C 1.76578 * 90.91654 * 180.02562 * 14 13 12 16 16 C 1.31432 * 110.29731 * 359.97438 * 15 14 13 17 17 N 1.35312 * 107.45447 * 0.02562 * 13 12 11 18 18 C 1.52953 * 110.10697 * 179.97438 * 16 15 14 19 19 C 1.54163 * 105.02133 * 342.47419 * 18 16 15 20 20 C 1.52315 * 138.68699 * 179.90049 * 15 14 13 21 21 H 0.97001 * 119.99702 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47174 * 59.99791 * 9 7 2 23 23 H 1.09000 * 109.47009 * 299.99605 * 9 7 2 24 24 H 1.08007 * 126.14509 * 179.97438 * 12 11 10 25 25 H 1.09002 * 110.34782 * 101.39196 * 18 16 15 26 26 H 1.09003 * 110.35107 * 223.55734 * 18 16 15 27 27 H 1.09002 * 111.03737 * 144.38798 * 19 18 16 28 28 H 1.08995 * 111.03705 * 268.32770 * 19 18 16 29 29 H 1.09004 * 110.39125 * 316.25087 * 20 15 14 30 30 H 1.09003 * 110.38999 * 78.51625 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0023 11 7 4.2673 -3.3312 1.0628 12 6 4.6959 -4.5426 0.6903 13 6 4.7086 -4.5771 -0.6735 14 16 5.0721 -5.6023 -2.0530 15 6 4.6160 -4.3116 -3.1684 16 6 4.2375 -3.2446 -2.5007 17 7 4.2826 -3.3707 -1.1140 18 6 3.8442 -2.1294 -3.4708 19 6 4.4659 -2.5370 -4.8213 20 6 4.5345 -4.0734 -4.6705 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8752 -0.6806 -0.8889 24 1 4.9815 -5.3482 1.3506 25 1 2.7593 -2.0667 -3.5564 26 1 4.2532 -1.1755 -3.1377 27 1 3.8193 -2.2524 -5.6515 28 1 5.4616 -2.1094 -4.9386 29 1 5.4237 -4.4635 -5.1658 30 1 3.6378 -4.5381 -5.0806 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259902981.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:23 Heat of formation + Delta-G solvation = 71.332760 kcal Electronic energy + Delta-G solvation = -15616.431622 eV Core-core repulsion = 13117.620178 eV Total energy + Delta-G solvation = -2498.811444 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.67643 -39.69977 -35.58190 -35.08153 -32.87124 -29.88280 -29.15525 -28.70359 -25.04200 -23.77409 -22.91461 -20.91917 -19.97179 -19.15414 -19.14913 -17.28038 -16.62378 -16.38964 -16.02304 -15.58485 -14.97956 -14.47652 -14.31230 -14.02327 -13.77128 -13.59132 -13.34154 -12.92610 -12.58318 -12.54002 -12.16738 -12.12499 -12.01210 -11.78103 -11.63388 -11.33244 -10.93302 -10.85670 -10.01632 -8.37440 -8.18590 -6.45589 -0.02087 0.11142 0.64869 1.14225 1.33088 1.37921 1.49360 1.58418 1.96256 2.30279 2.95801 3.24141 3.51952 3.61547 3.83222 4.04798 4.11644 4.31090 4.47489 4.58917 4.65296 4.73346 4.83756 4.85819 4.97705 5.09296 5.23247 5.26842 5.36051 5.49468 6.00531 6.17183 6.56062 6.89178 7.17098 8.79901 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.008410 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.987373 B = 3328.643119 C = 4112.737584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.019 3.981 3 Si 0.950 3.050 4 H -0.251 1.251 5 H -0.278 1.278 6 H -0.248 1.248 7 C -0.524 4.524 8 H 0.015 0.985 9 C 0.077 3.923 10 C 0.234 3.766 11 N -0.492 5.492 12 C -0.005 4.005 13 C -0.120 4.120 14 S 0.178 5.822 15 C -0.202 4.202 16 C 0.019 3.981 17 N -0.401 5.401 18 C -0.058 4.058 19 C -0.097 4.097 20 C -0.032 4.032 21 H 0.272 0.728 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.207 0.793 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.709 -6.708 -13.026 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.172 1.172 7 C -0.563 4.563 8 H 0.034 0.966 9 C 0.038 3.962 10 C -0.029 4.029 11 N -0.208 5.208 12 C -0.163 4.163 13 C -0.344 4.344 14 S 0.436 5.564 15 C -0.321 4.321 16 C -0.089 4.089 17 N -0.078 5.078 18 C -0.098 4.098 19 C -0.136 4.136 20 C -0.072 4.072 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.223 0.777 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.136 0.864 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.930 -7.664 -12.422 19.499 hybrid contribution -0.879 1.562 0.410 1.839 sum 12.052 -6.101 -12.012 18.077 Atomic orbital electron populations 1.70040 1.08337 1.28696 1.50964 1.25899 0.95647 1.03209 0.93177 0.85676 0.79438 0.77649 0.80145 1.17513 1.20327 1.17193 1.20786 0.89672 0.92999 1.52812 0.96636 1.18041 0.94903 0.84371 0.98847 1.24142 1.02463 0.97469 0.78795 1.70122 1.17945 1.04778 1.27927 1.22350 1.07826 0.96602 0.89529 1.24753 1.16381 0.92096 1.01166 1.83590 1.74391 1.10918 0.87520 1.25840 1.07451 0.95332 1.03451 1.21380 1.05303 1.02326 0.79904 1.43880 1.46278 1.11931 1.05671 1.21390 1.01943 0.94197 0.92280 1.22442 1.03004 0.93771 0.94401 1.21113 1.05241 0.97259 0.83548 0.91900 0.93046 0.93627 0.77655 0.90202 0.90635 0.86419 0.88561 0.87043 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 2 C 0.02 1.12 5.47 84.66 0.46 1.58 16 3 Si 0.95 42.79 27.47 68.60 1.88 44.67 16 4 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.52 -31.48 9.65 25.60 0.25 -31.23 16 8 H 0.02 1.06 7.98 -2.91 -0.02 1.04 16 9 C 0.08 3.95 4.67 29.10 0.14 4.09 16 10 C 0.23 11.59 7.37 137.35 1.01 12.61 16 11 N -0.49 -24.00 11.22 -185.33 -2.08 -26.08 16 12 C -0.01 -0.22 11.95 83.97 1.00 0.78 16 13 C -0.12 -4.66 7.83 83.73 0.66 -4.00 16 14 S 0.18 5.00 23.36 -56.49 -1.32 3.68 16 15 C -0.20 -5.59 7.25 25.75 0.19 -5.40 16 16 C 0.02 0.66 7.63 41.64 0.32 0.98 16 17 N -0.40 -17.31 3.17 -325.98 -1.03 -18.35 16 18 C -0.06 -1.66 6.82 30.97 0.21 -1.45 16 19 C -0.10 -1.59 7.17 31.51 0.23 -1.36 16 20 C -0.03 -0.54 6.83 30.89 0.21 -0.32 16 21 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 22 H 0.05 2.61 7.20 -2.39 -0.02 2.59 16 23 H 0.05 2.13 7.32 -2.39 -0.02 2.11 16 24 H 0.21 6.45 8.06 -2.91 -0.02 6.43 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.08 2.22 7.89 -2.39 -0.02 2.20 16 27 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.92 270.04 3.52 -72.41 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.10 Total: 5.84 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.67 Total: -23.75 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -2.81 Total: -102.84 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.32 Total: 3.68 kcal Total: -75.92 3.52 -72.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902981.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.738 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds