Wall clock time and date at job start Mon Mar 30 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 C 1.50698 * 109.46938 * 120.00452 * 2 1 3 5 5 N 1.30325 * 125.97329 * 300.25420 * 4 2 1 6 6 N 1.39873 * 109.22787 * 180.19173 * 5 4 2 7 7 C 1.46506 * 125.67581 * 179.85061 * 6 5 4 8 8 F 1.39900 * 109.46822 * 269.69432 * 7 6 5 9 9 F 1.39897 * 109.46905 * 29.68877 * 7 6 5 10 10 F 1.39895 * 109.47093 * 149.69118 * 7 6 5 11 11 C 1.34500 * 108.64885 * 359.58159 * 6 5 4 12 12 C 1.39279 * 107.18820 * 0.24488 * 11 6 5 13 13 C 1.41603 * 126.55511 * 180.02562 * 12 11 6 14 14 H 1.08002 * 119.99553 * 179.97438 * 13 12 11 15 15 C 1.39695 * 120.00078 * 359.97294 * 13 12 11 16 16 N 1.31026 * 119.99802 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99772 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47296 * 90.00309 * 17 15 13 19 19 H 1.48503 * 109.47134 * 210.00264 * 17 15 13 20 20 H 1.48500 * 109.47092 * 330.00239 * 17 15 13 21 21 H 1.08997 * 109.47303 * 300.00072 * 1 2 3 22 22 H 1.09005 * 109.47205 * 59.99839 * 1 2 3 23 23 H 1.09001 * 109.47388 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46700 * 239.99906 * 2 1 3 25 25 H 1.08997 * 109.47191 * 59.99859 * 3 2 1 26 26 H 1.08997 * 109.46800 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47101 * 299.99716 * 3 2 1 28 28 H 1.08001 * 126.40713 * 180.21740 * 11 6 5 29 29 H 0.97003 * 119.99773 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7865 -0.3710 2.4644 6 7 2.4279 -1.2676 3.3253 7 6 2.3941 -1.2191 4.7892 8 9 3.4605 -0.4423 5.2547 9 9 1.1861 -0.6522 5.2092 10 9 2.5036 -2.5163 5.3014 11 6 3.0761 -2.1851 2.5857 12 6 2.8514 -1.8688 1.2480 13 6 3.3454 -2.5697 0.1211 14 1 3.1037 -2.2295 -0.8750 15 6 4.1455 -3.7012 0.2979 16 7 4.4383 -4.1141 1.5064 17 14 4.7966 -4.6261 -1.1886 18 1 6.1125 -4.0632 -1.5846 19 1 4.9552 -6.0626 -0.8473 20 1 3.8396 -4.4879 -2.3157 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 3.1299 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.6616 -3.0122 2.9591 29 1 4.9936 -4.9000 1.6292 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259912922.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:11 Heat of formation + Delta-G solvation = -88.476500 kcal Electronic energy + Delta-G solvation = -18514.971759 eV Core-core repulsion = 15024.620854 eV Total energy + Delta-G solvation = -3490.350905 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.67998 -47.37562 -47.30877 -39.66988 -34.91347 -33.60515 -30.62032 -28.86090 -26.60820 -25.86676 -24.19489 -21.85484 -20.17487 -18.69060 -18.27306 -17.84084 -17.56599 -16.37649 -14.91295 -14.26022 -14.23681 -14.06727 -13.79882 -13.76175 -13.55599 -13.49293 -13.44098 -13.22114 -12.44028 -12.31557 -11.98105 -11.67925 -11.61158 -11.23411 -10.78558 -10.64869 -10.53589 -10.26358 -9.84482 -9.43054 -9.17464 -8.38506 -7.38142 -6.56472 -4.22301 2.32523 2.90142 3.06292 3.14920 3.18287 3.58540 4.05342 4.05848 4.40523 4.85859 5.35792 5.38707 5.52911 5.81944 6.09490 6.09717 6.18188 6.34594 6.44922 6.56688 6.75289 6.79928 7.03575 7.33376 7.52257 7.65359 8.02028 8.49566 8.81045 8.93162 9.08325 10.43854 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.017823 B = 0.009911 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.604555 B = 2824.443140 C = 4044.640816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.004 4.004 3 C -0.138 4.138 4 C 0.061 3.939 5 N -0.304 5.304 6 N -0.452 5.452 7 C 0.698 3.302 8 F -0.172 7.172 9 F -0.162 7.162 10 F -0.159 7.159 11 C -0.064 4.064 12 C -0.022 4.022 13 C -0.421 4.421 14 H 0.076 0.924 15 C 0.056 3.944 16 N -0.835 5.835 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.266 1.266 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.200 0.800 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 3.886 0.773 4.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.196 4.196 4 C -0.110 4.110 5 N -0.123 5.123 6 N -0.252 5.252 7 C 0.560 3.440 8 F -0.155 7.155 9 F -0.144 7.144 10 F -0.140 7.140 11 C -0.199 4.199 12 C -0.031 4.031 13 C -0.455 4.455 14 H 0.095 0.905 15 C -0.154 4.154 16 N -0.467 5.467 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.190 1.190 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.216 0.784 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.251 4.454 1.794 5.799 hybrid contribution 0.867 -1.194 -0.690 1.629 sum -2.384 3.260 1.104 4.187 Atomic orbital electron populations 1.21782 0.95009 1.01719 1.01074 1.19420 0.94889 0.94668 0.93502 1.21778 1.01205 0.95527 1.01068 1.22532 0.99367 0.97086 0.91980 1.76496 1.20471 1.14923 1.00458 1.48461 1.47586 1.28088 1.01057 1.17290 0.74174 0.73766 0.78749 1.93251 1.57595 1.75645 1.88961 1.93209 1.45608 1.85349 1.90191 1.93242 1.95960 1.38002 1.86829 1.23910 1.06885 0.98526 0.90605 1.18027 0.98581 0.93892 0.92607 1.18797 1.26195 1.08034 0.92480 0.90547 1.25623 0.95675 0.97242 0.96848 1.69405 1.32326 1.22997 1.21922 0.86124 0.79477 0.78472 0.81451 1.19915 1.20611 1.18987 0.92627 0.93037 0.92727 0.89350 0.92648 0.92718 0.93028 0.78369 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.18 37.16 0.34 -1.91 15 2 C 0.00 -0.08 3.30 -91.77 -0.30 -0.38 15 3 C -0.14 -2.25 9.18 37.16 0.34 -1.91 15 4 C 0.06 1.42 5.79 -81.84 -0.47 0.95 15 5 N -0.30 -7.27 12.28 34.00 0.42 -6.85 15 6 N -0.45 -10.88 3.87 -64.94 -0.25 -11.13 15 7 C 0.70 14.42 4.09 59.85 0.24 14.67 15 8 F -0.17 -3.41 17.51 2.25 0.04 -3.37 15 9 F -0.16 -3.15 17.32 2.25 0.04 -3.12 15 10 F -0.16 -3.12 16.97 2.25 0.04 -3.09 15 11 C -0.06 -1.67 10.00 -16.00 -0.16 -1.83 15 12 C -0.02 -0.58 5.94 -106.84 -0.63 -1.22 15 13 C -0.42 -10.87 9.15 -37.76 -0.35 -11.22 15 14 H 0.08 1.85 6.89 -52.49 -0.36 1.49 15 15 C 0.06 1.41 5.49 -17.35 -0.10 1.32 15 16 N -0.84 -21.55 10.33 55.54 0.57 -20.98 15 17 Si 0.92 18.98 29.56 -169.99 -5.02 13.95 15 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 24 H 0.09 1.64 6.93 -51.93 -0.36 1.28 15 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.20 5.35 5.75 -52.49 -0.30 5.05 15 29 H 0.28 6.57 8.30 -40.82 -0.34 6.23 15 LS Contribution 268.01 15.07 4.04 4.04 Total: -1.00 -27.11 268.01 -3.91 -31.01 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -2.69 Total: 1.07 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.08 Total: -1.54 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.74 Total: -38.96 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 0.12 Total: -9.57 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.11 -3.91 -31.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259912922.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.462 kcal (2) G-P(sol) polarization free energy of solvation -27.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds