Wall clock time and date at job start Mon Mar 30 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29835 * 122.54800 * 2 1 4 4 C 1.31201 * 117.53930 * 179.97438 * 3 2 1 5 5 C 1.46363 * 125.15117 * 180.02562 * 4 3 2 6 6 C 1.38258 * 126.24364 * 180.02562 * 5 4 3 7 7 C 1.39877 * 107.11267 * 179.73655 * 6 5 4 8 8 C 1.35464 * 107.89977 * 0.02562 * 7 6 5 9 9 N 1.36018 * 108.87224 * 359.97438 * 8 7 6 10 10 C 1.46502 * 125.70029 * 180.02562 * 9 8 7 11 11 S 1.76089 * 109.69951 * 0.26285 * 4 3 2 12 12 C 1.38913 * 122.54406 * 179.97438 * 2 1 3 13 13 C 1.39708 * 126.08279 * 0.02562 * 12 2 1 14 14 H 1.08007 * 119.99733 * 353.68352 * 13 12 2 15 15 C 1.39985 * 120.00039 * 173.68767 * 13 12 2 16 16 N 1.30915 * 119.99966 * 6.58132 * 15 13 12 17 17 Si 1.86804 * 119.99669 * 186.58367 * 15 13 12 18 18 H 1.48496 * 109.47056 * 94.98793 * 17 15 13 19 19 H 1.48510 * 109.46765 * 214.98201 * 17 15 13 20 20 H 1.48499 * 109.47381 * 334.97834 * 17 15 13 21 21 H 1.09004 * 109.47021 * 90.02483 * 1 2 3 22 22 H 1.08997 * 109.47422 * 210.02074 * 1 2 3 23 23 H 1.09000 * 109.46778 * 330.02378 * 1 2 3 24 24 H 1.08004 * 126.44188 * 359.73902 * 6 5 4 25 25 H 1.08002 * 126.05068 * 180.02562 * 7 6 5 26 26 H 1.08002 * 125.56337 * 180.02562 * 8 7 6 27 27 H 1.08994 * 109.47470 * 269.97783 * 10 9 8 28 28 H 1.08996 * 109.46977 * 29.98462 * 10 9 8 29 29 H 1.09005 * 109.46927 * 149.97483 * 10 9 8 30 30 H 0.97001 * 119.99962 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2055 1.0944 0.0000 4 6 3.5125 0.9799 0.0005 5 6 4.4564 2.0985 0.0011 6 6 5.8358 2.0040 0.0012 7 6 6.3377 3.3096 -0.0043 8 6 5.2839 4.1608 -0.0069 9 7 4.1329 3.4360 -0.0039 10 6 2.7755 3.9872 -0.0059 11 16 3.9591 -0.7234 -0.0065 12 6 2.2542 -1.1710 0.0005 13 6 1.7451 -2.4720 0.0006 14 1 0.6825 -2.6360 0.1031 15 6 2.6121 -3.5630 -0.1321 16 7 3.9076 -3.3740 -0.1268 17 14 1.9206 -5.2884 -0.3170 18 1 1.8336 -5.6350 -1.7583 19 1 2.8127 -6.2556 0.3717 20 1 0.5661 -5.3464 0.2889 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5141 23 1 -0.3633 0.8902 0.5135 24 1 6.4165 1.0934 0.0047 25 1 7.3808 3.5895 -0.0061 26 1 5.3473 5.2390 -0.0116 27 1 2.4388 4.1276 1.0212 28 1 2.7737 4.9465 -0.5233 29 1 2.1040 3.2974 -0.5173 30 1 4.5084 -4.1299 -0.2191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259915606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:20 Heat of formation + Delta-G solvation = 57.787089 kcal Electronic energy + Delta-G solvation = -15245.690080 eV Core-core repulsion = 12746.291251 eV Total energy + Delta-G solvation = -2499.398829 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.10585 -37.51006 -34.43152 -32.05801 -30.91946 -28.45994 -27.82203 -25.69922 -24.07496 -22.70968 -19.89900 -18.86875 -18.48875 -17.28133 -16.20801 -15.50846 -14.84110 -14.55784 -13.80365 -13.21897 -12.87065 -12.70064 -12.47525 -12.12334 -11.81538 -11.71379 -11.68785 -11.61730 -11.34464 -11.17071 -11.12197 -10.90996 -10.54499 -9.98995 -9.34301 -8.22851 -8.06105 -7.90551 -7.52663 -7.22953 -6.68411 -4.62664 2.07735 2.77354 2.80494 2.86752 3.16354 3.22148 3.51275 3.68229 3.70461 4.04796 4.36870 4.90220 5.41998 5.62515 5.69296 5.82316 6.10059 6.27416 6.31687 6.40030 6.52763 6.58334 6.67354 6.76860 6.96977 7.08028 7.16163 7.52761 7.70983 7.80573 7.97213 8.12853 8.15804 8.28798 9.55423 9.60188 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.006877 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.236401 B = 4070.588960 C = 4816.600182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.133 4.133 3 N -0.419 5.419 4 C -0.134 4.134 5 C 0.163 3.837 6 C -0.229 4.229 7 C -0.191 4.191 8 C -0.055 4.055 9 N -0.439 5.439 10 C 0.080 3.920 11 S 0.132 5.868 12 C 0.000 4.000 13 C -0.348 4.348 14 H 0.104 0.896 15 C 0.045 3.955 16 N -0.759 5.759 17 Si 0.940 3.060 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.255 1.255 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.149 0.851 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 2.622 -0.228 2.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.273 4.273 3 N -0.132 5.132 4 C -0.395 4.395 5 C 0.048 3.952 6 C -0.254 4.254 7 C -0.216 4.216 8 C -0.185 4.185 9 N -0.115 5.115 10 C -0.062 4.062 11 S 0.384 5.616 12 C -0.124 4.124 13 C -0.386 4.386 14 H 0.122 0.878 15 C -0.179 4.179 16 N -0.385 5.385 17 Si 0.763 3.237 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.179 1.179 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.147 0.853 25 H 0.144 0.856 26 H 0.167 0.833 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.100 2.823 -0.242 2.835 hybrid contribution -1.042 -0.655 -0.074 1.233 sum -0.942 2.169 -0.316 2.385 Atomic orbital electron populations 1.19708 0.90132 1.00033 0.99517 1.19818 0.95700 0.86346 1.25465 1.65322 1.04917 1.32765 1.10173 1.23654 0.90951 0.96253 1.28671 1.18202 0.91703 0.80501 1.04838 1.20888 0.91564 0.97190 1.15806 1.20499 0.97261 0.92891 1.10948 1.21520 0.84933 0.96523 1.15534 1.43954 1.05886 1.05489 1.56200 1.21996 0.82274 0.99349 1.02568 1.84962 1.06607 0.95644 1.74343 1.23149 0.94502 0.97132 0.97603 1.19279 0.96288 0.88546 1.34493 0.87826 1.26349 0.94568 1.03703 0.93279 1.69008 1.03682 1.35463 1.30362 0.85707 0.80132 0.78076 0.79798 1.18772 1.19469 1.17861 0.94242 0.92885 0.93829 0.85296 0.85632 0.83329 0.92095 0.91697 0.87918 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.71 10.04 36.00 0.36 -0.35 16 2 C -0.13 -3.34 6.84 -83.19 -0.57 -3.91 16 3 N -0.42 -10.65 8.34 -6.92 -0.06 -10.71 16 4 C -0.13 -3.41 7.37 -14.55 -0.11 -3.52 16 5 C 0.16 3.81 6.89 -81.99 -0.56 3.25 16 6 C -0.23 -4.96 10.65 -38.96 -0.42 -5.38 16 7 C -0.19 -3.57 10.81 -39.96 -0.43 -4.00 16 8 C -0.06 -1.00 11.40 -16.69 -0.19 -1.19 16 9 N -0.44 -8.95 3.17 -120.10 -0.38 -9.33 16 10 C 0.08 1.39 10.67 59.85 0.64 2.03 16 11 S 0.13 3.34 20.23 -107.50 -2.17 1.17 16 12 C 0.00 0.01 6.23 -38.78 -0.24 -0.23 16 13 C -0.35 -8.29 8.89 -38.38 -0.34 -8.63 16 14 H 0.10 2.28 6.82 -52.48 -0.36 1.92 16 15 C 0.04 0.99 5.49 -17.29 -0.09 0.89 16 16 N -0.76 -17.50 10.77 55.55 0.60 -16.90 16 17 Si 0.94 16.33 29.57 -169.99 -5.03 11.30 16 18 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 19 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 20 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.05 1.02 7.01 -51.93 -0.36 0.66 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.13 2.71 8.06 -52.48 -0.42 2.29 16 25 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 26 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 2.00 6.38 -51.93 -0.33 1.67 16 30 H 0.30 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 273.93 15.07 4.13 4.13 Total: -1.00 -28.22 273.93 -8.02 -36.24 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.15 Total: 5.16 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -1.96 Total: -21.04 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.16 Total: -36.95 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.30 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -2.17 Total: 1.17 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.22 -8.02 -36.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.023 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds