Wall clock time and date at job start Mon Mar 30 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29835 * 122.54800 * 2 1 4 4 C 1.31201 * 117.53930 * 179.97438 * 3 2 1 5 5 C 1.46363 * 125.15117 * 180.02562 * 4 3 2 6 6 C 1.38258 * 126.24364 * 180.02562 * 5 4 3 7 7 C 1.39877 * 107.11267 * 179.73655 * 6 5 4 8 8 C 1.35464 * 107.89977 * 0.02562 * 7 6 5 9 9 N 1.36018 * 108.87224 * 359.97438 * 8 7 6 10 10 C 1.46502 * 125.70029 * 180.02562 * 9 8 7 11 11 S 1.76089 * 109.69951 * 0.26285 * 4 3 2 12 12 C 1.38913 * 122.54406 * 179.97438 * 2 1 3 13 13 C 1.39708 * 126.08279 * 0.02562 * 12 2 1 14 14 H 1.08007 * 119.99733 * 353.68352 * 13 12 2 15 15 C 1.39985 * 120.00039 * 173.68767 * 13 12 2 16 16 N 1.30915 * 119.99966 * 6.58132 * 15 13 12 17 17 Si 1.86804 * 119.99669 * 186.58367 * 15 13 12 18 18 H 1.48496 * 109.47056 * 94.98793 * 17 15 13 19 19 H 1.48510 * 109.46765 * 214.98201 * 17 15 13 20 20 H 1.48499 * 109.47381 * 334.97834 * 17 15 13 21 21 H 1.09004 * 109.47021 * 90.02483 * 1 2 3 22 22 H 1.08997 * 109.47422 * 210.02074 * 1 2 3 23 23 H 1.09000 * 109.46778 * 330.02378 * 1 2 3 24 24 H 1.08004 * 126.44188 * 359.73902 * 6 5 4 25 25 H 1.08002 * 126.05068 * 180.02562 * 7 6 5 26 26 H 1.08002 * 125.56337 * 180.02562 * 8 7 6 27 27 H 1.08994 * 109.47470 * 269.97783 * 10 9 8 28 28 H 1.08996 * 109.46977 * 29.98462 * 10 9 8 29 29 H 1.09005 * 109.46927 * 149.97483 * 10 9 8 30 30 H 0.97001 * 119.99962 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2055 1.0944 0.0000 4 6 3.5125 0.9799 0.0005 5 6 4.4564 2.0985 0.0011 6 6 5.8358 2.0040 0.0012 7 6 6.3377 3.3096 -0.0043 8 6 5.2839 4.1608 -0.0069 9 7 4.1329 3.4360 -0.0039 10 6 2.7755 3.9872 -0.0059 11 16 3.9591 -0.7234 -0.0065 12 6 2.2542 -1.1710 0.0005 13 6 1.7451 -2.4720 0.0006 14 1 0.6825 -2.6360 0.1031 15 6 2.6121 -3.5630 -0.1321 16 7 3.9076 -3.3740 -0.1268 17 14 1.9206 -5.2884 -0.3170 18 1 1.8336 -5.6350 -1.7583 19 1 2.8127 -6.2556 0.3717 20 1 0.5661 -5.3464 0.2889 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5141 23 1 -0.3633 0.8902 0.5135 24 1 6.4165 1.0934 0.0047 25 1 7.3808 3.5895 -0.0061 26 1 5.3473 5.2390 -0.0116 27 1 2.4388 4.1276 1.0212 28 1 2.7737 4.9465 -0.5233 29 1 2.1040 3.2974 -0.5173 30 1 4.5084 -4.1299 -0.2191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259915606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:19 Heat of formation + Delta-G solvation = 42.656897 kcal Electronic energy + Delta-G solvation = -15246.346174 eV Core-core repulsion = 12746.291251 eV Total energy + Delta-G solvation = -2500.054923 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.64685 -39.32712 -36.19792 -33.54053 -32.67683 -30.19531 -29.46501 -27.14014 -25.84249 -24.45430 -21.46075 -20.53438 -20.22451 -18.98778 -17.83538 -17.33447 -16.39592 -16.06907 -15.33973 -14.97815 -14.47024 -14.35681 -13.97963 -13.75956 -13.43640 -13.28723 -13.22466 -13.15014 -12.89332 -12.73512 -12.72305 -12.49754 -12.00141 -11.59638 -11.22895 -10.03127 -9.91089 -9.44065 -9.37033 -8.95685 -8.45025 -6.44353 0.30237 1.31527 1.34535 1.37359 1.56478 1.68444 1.84367 2.10817 2.11661 2.44814 2.61425 3.07320 3.93530 4.13466 4.37547 4.47455 4.64721 4.71009 4.76045 4.82209 4.87821 4.91018 5.03892 5.13415 5.31298 5.47164 5.53918 5.73437 5.97322 6.20381 6.28167 6.34779 6.50991 6.72905 7.72490 7.88688 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.006877 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.236401 B = 4070.588960 C = 4816.600182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 C -0.167 4.167 3 N -0.426 5.426 4 C -0.149 4.149 5 C 0.112 3.888 6 C -0.238 4.238 7 C -0.202 4.202 8 C -0.033 4.033 9 N -0.445 5.445 10 C 0.079 3.921 11 S 0.092 5.908 12 C -0.027 4.027 13 C -0.362 4.362 14 H 0.120 0.880 15 C 0.006 3.994 16 N -0.784 5.784 17 Si 1.018 2.982 18 H -0.259 1.259 19 H -0.262 1.262 20 H -0.245 1.245 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.120 0.880 25 H 0.158 0.842 26 H 0.198 0.802 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.982 2.964 -0.330 3.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.306 4.306 3 N -0.139 5.139 4 C -0.410 4.410 5 C -0.003 4.003 6 C -0.265 4.265 7 C -0.227 4.227 8 C -0.163 4.163 9 N -0.121 5.121 10 C -0.062 4.062 11 S 0.344 5.656 12 C -0.151 4.151 13 C -0.399 4.399 14 H 0.138 0.862 15 C -0.215 4.215 16 N -0.410 5.410 17 Si 0.835 3.165 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.167 1.167 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.138 0.862 25 H 0.175 0.825 26 H 0.214 0.786 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.271 3.190 -0.339 3.219 hybrid contribution -0.833 -0.708 -0.043 1.094 sum -1.104 2.481 -0.382 2.743 Atomic orbital electron populations 1.19705 0.87581 1.00944 1.00331 1.20484 0.97606 0.86221 1.26326 1.65386 1.04963 1.32911 1.10620 1.24032 0.91418 0.96664 1.28936 1.18275 0.92025 0.81667 1.08368 1.21114 0.91374 0.98572 1.15401 1.20887 0.99267 0.91436 1.11065 1.22333 0.83631 0.98506 1.11857 1.44230 1.07572 1.04665 1.55633 1.22099 0.80615 1.00328 1.03164 1.84825 1.07929 0.97058 1.75781 1.23534 0.94279 0.98417 0.98870 1.19749 0.97488 0.88545 1.34083 0.86245 1.27450 0.94498 1.07630 0.91887 1.69064 1.05120 1.37276 1.29523 0.84603 0.79790 0.72246 0.79875 1.18311 1.18610 1.16747 0.93363 0.91823 0.92960 0.86164 0.82462 0.78562 0.91564 0.87454 0.90590 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.09 10.04 71.23 0.72 -0.37 16 2 C -0.17 -8.60 6.84 43.01 0.29 -8.30 16 3 N -0.43 -22.39 8.34 -175.80 -1.47 -23.86 16 4 C -0.15 -7.90 7.37 86.90 0.64 -7.26 16 5 C 0.11 5.34 6.89 40.36 0.28 5.61 16 6 C -0.24 -10.45 10.65 22.67 0.24 -10.21 16 7 C -0.20 -7.15 10.81 22.03 0.24 -6.92 16 8 C -0.03 -1.08 11.40 83.40 0.95 -0.13 16 9 N -0.44 -17.62 3.17 -533.89 -1.69 -19.31 16 10 C 0.08 2.63 10.67 127.77 1.36 4.00 16 11 S 0.09 4.89 20.23 -56.49 -1.14 3.75 16 12 C -0.03 -1.44 6.23 22.79 0.14 -1.29 16 13 C -0.36 -17.30 8.89 23.05 0.20 -17.10 16 14 H 0.12 5.16 6.82 -2.91 -0.02 5.14 16 15 C 0.01 0.28 5.49 85.25 0.47 0.75 16 16 N -0.78 -36.55 10.77 21.84 0.24 -36.32 16 17 Si 1.02 32.10 29.57 68.60 2.03 34.12 16 18 H -0.26 -7.98 7.11 99.48 0.71 -7.27 16 19 H -0.26 -7.88 7.11 99.48 0.71 -7.18 16 20 H -0.24 -7.27 7.11 99.48 0.71 -6.57 16 21 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 22 H 0.06 2.43 7.01 -2.39 -0.02 2.41 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 25 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 26 H 0.20 4.47 8.06 -2.91 -0.02 4.44 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.08 2.97 6.38 -2.38 -0.02 2.95 16 30 H 0.31 12.83 8.30 -92.71 -0.77 12.06 16 Total: -1.00 -63.32 273.93 4.65 -58.67 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 1.15 Total: 24.16 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 5.54 Total: -41.22 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -2.93 Total: -79.48 kcal Atomic # 14 Polarization: 32.10 SS G_CDS: 2.03 Total: 34.12 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -1.14 Total: 3.75 kcal Total: -63.32 4.65 -58.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.326 kcal (2) G-P(sol) polarization free energy of solvation -63.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds