Wall clock time and date at job start Mon Mar 30 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00321 * 2 1 4 4 C 1.37662 * 119.99728 * 179.72107 * 2 1 3 5 5 N 1.29297 * 124.85406 * 359.70259 * 4 2 1 6 6 C 1.33609 * 118.15221 * 179.76643 * 5 4 2 7 7 C 1.41883 * 128.42479 * 180.17696 * 6 5 4 8 8 C 1.35301 * 120.88803 * 180.31098 * 7 6 5 9 9 C 1.41209 * 120.49726 * 0.03557 * 8 7 6 10 10 C 1.40996 * 120.26910 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00289 * 334.60237 * 10 9 8 12 12 C 1.39839 * 119.99831 * 154.60491 * 10 9 8 13 13 N 1.30916 * 119.99939 * 343.00458 * 12 10 9 14 14 Si 1.86800 * 120.00023 * 163.00164 * 12 10 9 15 15 H 1.48496 * 109.47146 * 60.00208 * 14 12 10 16 16 H 1.48506 * 109.47006 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47265 * 299.99991 * 14 12 10 18 18 C 1.40544 * 119.45862 * 359.97438 * 9 8 7 19 19 C 1.38346 * 119.87341 * 359.97438 * 18 9 8 20 20 S 1.75823 * 124.85692 * 179.97438 * 4 2 1 21 21 H 1.08995 * 109.47052 * 89.99682 * 1 2 3 22 22 H 1.09003 * 109.47216 * 210.00356 * 1 2 3 23 23 H 1.09005 * 109.46849 * 330.00288 * 1 2 3 24 24 H 1.08996 * 109.46790 * 89.99753 * 3 2 1 25 25 H 1.08995 * 109.46859 * 209.99708 * 3 2 1 26 26 H 1.08996 * 109.46617 * 330.00274 * 3 2 1 27 27 H 1.08001 * 119.55346 * 0.32586 * 7 6 5 28 28 H 1.08001 * 119.75291 * 180.02562 * 8 7 6 29 29 H 0.97007 * 120.00015 * 179.97438 * 13 12 10 30 30 H 1.07997 * 120.06130 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1533 -1.1922 0.0058 5 7 1.6038 -2.3626 0.0170 6 6 2.4022 -3.4338 0.0166 7 6 2.0380 -4.8051 0.0240 8 6 2.9818 -5.7745 0.0287 9 6 4.3535 -5.4392 0.0270 10 6 5.3331 -6.4533 0.0325 11 1 5.1006 -7.4265 0.4388 12 6 6.6058 -6.1988 -0.4881 13 7 6.7992 -5.1656 -1.2685 14 14 8.0299 -7.3330 -0.0700 15 1 7.7203 -8.7087 -0.5357 16 1 9.2622 -6.8489 -0.7425 17 1 8.2392 -7.3435 1.4002 18 6 4.7343 -4.0863 0.0199 19 6 3.7663 -3.0980 0.0141 20 16 3.9052 -1.3412 0.0059 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8901 0.5138 24 1 2.3792 1.5833 1.0276 25 1 3.1500 1.1382 -0.5138 26 1 1.6085 2.0283 -0.5138 27 1 0.9932 -5.0787 0.0257 28 1 2.6839 -6.8126 0.0339 29 1 7.6821 -4.9889 -1.6294 30 1 5.7807 -3.8188 0.0190 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259944240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:01 Heat of formation + Delta-G solvation = 53.969899 kcal Electronic energy + Delta-G solvation = -15106.927165 eV Core-core repulsion = 12607.362810 eV Total energy + Delta-G solvation = -2499.564355 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.80879 -37.04158 -35.10167 -33.12369 -29.51376 -29.08297 -28.04507 -26.17762 -24.12338 -22.14662 -21.00846 -19.48608 -17.64951 -17.09517 -16.06779 -15.31670 -15.04843 -14.74565 -13.99973 -13.62194 -13.11048 -13.07128 -12.60678 -12.45929 -12.27594 -11.95641 -11.80819 -11.38783 -11.28386 -11.13907 -10.88886 -10.44576 -10.08589 -9.49387 -9.34378 -8.91228 -8.58210 -8.43460 -7.04714 -6.92320 -6.72655 -4.39014 1.92959 2.09134 2.76414 2.84191 2.93768 2.99893 3.02846 3.45530 3.69657 3.81795 4.56027 5.09412 5.39531 5.44706 5.48967 5.61494 5.75369 5.80838 6.01514 6.15235 6.56732 6.73332 6.86594 7.07436 7.09527 7.24312 7.45942 7.53955 7.74603 7.93032 7.98396 8.35755 8.65915 8.66429 9.04158 10.00181 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.043641 B = 0.005946 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.449263 B = 4707.668242 C = 5260.994265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.603 5.603 3 C 0.104 3.896 4 C 0.308 3.692 5 N -0.510 5.510 6 C -0.017 4.017 7 C -0.051 4.051 8 C -0.184 4.184 9 C 0.115 3.885 10 C -0.441 4.441 11 H 0.085 0.915 12 C 0.072 3.928 13 N -0.780 5.780 14 Si 0.914 3.086 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.139 4.139 19 C -0.117 4.117 20 S -0.040 6.040 21 H 0.042 0.958 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.285 0.715 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 7.364 1.583 8.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.327 5.327 3 C -0.039 4.039 4 C -0.066 4.066 5 N -0.233 5.233 6 C -0.134 4.134 7 C -0.073 4.073 8 C -0.205 4.205 9 C 0.109 3.891 10 C -0.470 4.470 11 H 0.103 0.897 12 C -0.148 4.148 13 N -0.404 5.404 14 Si 0.737 3.263 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.165 4.165 19 C -0.235 4.235 20 S 0.206 5.794 21 H 0.060 0.940 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.512 8.298 1.425 9.122 hybrid contribution 0.436 -1.169 -0.001 1.248 sum -3.076 7.129 1.424 7.893 Atomic orbital electron populations 1.21445 0.78792 1.02211 1.00768 1.45034 1.04720 1.00976 1.81994 1.21563 0.96829 0.84345 1.01185 1.23030 0.90215 0.88658 1.04698 1.65433 1.38074 0.96581 1.23172 1.18080 0.86687 0.91911 1.16749 1.19827 0.98000 0.89026 1.00423 1.20673 0.93152 0.97418 1.09240 1.17464 0.91413 0.91873 0.88391 1.19554 0.95064 0.98920 1.33468 0.89671 1.26005 1.00380 0.95808 0.92627 1.69853 1.24711 1.25179 1.20678 0.86265 0.79257 0.80649 0.80081 1.18762 1.20155 1.18584 1.20424 0.97206 0.90455 1.08413 1.23063 0.97810 0.93225 1.09381 1.84228 1.06175 1.05242 1.83707 0.93979 0.90796 0.92302 0.93369 0.91561 0.91181 0.88086 0.87511 0.90344 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.53 10.55 59.85 0.63 2.17 16 2 N -0.60 -9.91 3.35 -190.75 -0.64 -10.55 16 3 C 0.10 1.29 10.41 59.85 0.62 1.91 16 4 C 0.31 6.44 7.86 -88.91 -0.70 5.74 16 5 N -0.51 -11.96 9.73 -11.04 -0.11 -12.07 16 6 C -0.02 -0.43 6.94 -84.86 -0.59 -1.02 16 7 C -0.05 -1.21 10.02 -39.23 -0.39 -1.60 16 8 C -0.18 -4.41 9.68 -39.50 -0.38 -4.79 16 9 C 0.11 2.99 5.56 -106.86 -0.59 2.40 16 10 C -0.44 -11.09 9.03 -37.94 -0.34 -11.44 16 11 H 0.09 2.00 7.90 -52.49 -0.41 1.59 16 12 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 13 N -0.78 -19.60 10.96 55.54 0.61 -18.99 16 14 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 15 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 16 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 17 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 18 C -0.14 -3.66 8.70 -38.67 -0.34 -4.00 16 19 C -0.12 -2.97 6.50 -38.70 -0.25 -3.22 16 20 S -0.04 -0.87 21.90 -107.50 -2.35 -3.22 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 23 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.86 7.04 -51.93 -0.37 0.49 16 26 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 27 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 30 H 0.12 3.36 6.18 -52.49 -0.32 3.04 16 LS Contribution 272.81 15.07 4.11 4.11 Total: -1.00 -29.11 272.81 -9.00 -38.11 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.16 Total: 2.11 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.42 Total: -12.23 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.14 Total: -41.61 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.35 Total: -3.22 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.11 -9.00 -38.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.075 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds