Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00321 * 2 1 4 4 C 1.37662 * 119.99728 * 179.72107 * 2 1 3 5 5 N 1.29297 * 124.85406 * 359.70259 * 4 2 1 6 6 C 1.33609 * 118.15221 * 179.76643 * 5 4 2 7 7 C 1.41883 * 128.42479 * 180.17696 * 6 5 4 8 8 C 1.35301 * 120.88803 * 180.31098 * 7 6 5 9 9 C 1.41209 * 120.49726 * 0.03557 * 8 7 6 10 10 C 1.40996 * 120.26910 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00289 * 334.60237 * 10 9 8 12 12 C 1.39839 * 119.99831 * 154.60491 * 10 9 8 13 13 N 1.30916 * 119.99939 * 343.00458 * 12 10 9 14 14 Si 1.86800 * 120.00023 * 163.00164 * 12 10 9 15 15 H 1.48496 * 109.47146 * 60.00208 * 14 12 10 16 16 H 1.48506 * 109.47006 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47265 * 299.99991 * 14 12 10 18 18 C 1.40544 * 119.45862 * 359.97438 * 9 8 7 19 19 C 1.38346 * 119.87341 * 359.97438 * 18 9 8 20 20 S 1.75823 * 124.85692 * 179.97438 * 4 2 1 21 21 H 1.08995 * 109.47052 * 89.99682 * 1 2 3 22 22 H 1.09003 * 109.47216 * 210.00356 * 1 2 3 23 23 H 1.09005 * 109.46849 * 330.00288 * 1 2 3 24 24 H 1.08996 * 109.46790 * 89.99753 * 3 2 1 25 25 H 1.08995 * 109.46859 * 209.99708 * 3 2 1 26 26 H 1.08996 * 109.46617 * 330.00274 * 3 2 1 27 27 H 1.08001 * 119.55346 * 0.32586 * 7 6 5 28 28 H 1.08001 * 119.75291 * 180.02562 * 8 7 6 29 29 H 0.97007 * 120.00015 * 179.97438 * 13 12 10 30 30 H 1.07997 * 120.06130 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1533 -1.1922 0.0058 5 7 1.6038 -2.3626 0.0170 6 6 2.4022 -3.4338 0.0166 7 6 2.0380 -4.8051 0.0240 8 6 2.9818 -5.7745 0.0287 9 6 4.3535 -5.4392 0.0270 10 6 5.3331 -6.4533 0.0325 11 1 5.1006 -7.4265 0.4388 12 6 6.6058 -6.1988 -0.4881 13 7 6.7992 -5.1656 -1.2685 14 14 8.0299 -7.3330 -0.0700 15 1 7.7203 -8.7087 -0.5357 16 1 9.2622 -6.8489 -0.7425 17 1 8.2392 -7.3435 1.4002 18 6 4.7343 -4.0863 0.0199 19 6 3.7663 -3.0980 0.0141 20 16 3.9052 -1.3412 0.0059 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8901 0.5138 24 1 2.3792 1.5833 1.0276 25 1 3.1500 1.1382 -0.5138 26 1 1.6085 2.0283 -0.5138 27 1 0.9932 -5.0787 0.0257 28 1 2.6839 -6.8126 0.0339 29 1 7.6821 -4.9889 -1.6294 30 1 5.7807 -3.8188 0.0190 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = 37.812705 kcal Electronic energy + Delta-G solvation = -15107.627793 eV Core-core repulsion = 12607.362810 eV Total energy + Delta-G solvation = -2500.264983 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57103 -38.60214 -36.73021 -34.89463 -31.38198 -30.86987 -29.12780 -27.76428 -25.75847 -23.90466 -22.77832 -21.11771 -19.47295 -18.79530 -17.64722 -16.99232 -16.39707 -16.34380 -15.61972 -15.21225 -14.83214 -14.68036 -14.36373 -13.76239 -13.45524 -13.35471 -13.19128 -12.99324 -12.84575 -12.77832 -12.52024 -12.17413 -11.80302 -11.30633 -11.08991 -10.72827 -10.31589 -10.06509 -8.81831 -8.73399 -8.41337 -6.27376 0.16337 0.40007 0.85705 1.02636 1.37500 1.42250 1.53330 1.92791 2.10653 2.19569 2.74440 3.58604 3.78270 4.22738 4.37913 4.42879 4.49580 4.77016 4.79468 4.81585 4.88129 4.96549 5.03660 5.23480 5.32617 5.55939 5.71897 5.91494 5.99275 6.09875 6.28272 6.48732 6.79343 6.82079 7.28434 8.24992 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.043641 B = 0.005946 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.449263 B = 4707.668242 C = 5260.994265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.597 5.597 3 C 0.094 3.906 4 C 0.323 3.677 5 N -0.541 5.541 6 C -0.025 4.025 7 C -0.062 4.062 8 C -0.187 4.187 9 C 0.085 3.915 10 C -0.472 4.472 11 H 0.093 0.907 12 C 0.032 3.968 13 N -0.818 5.818 14 Si 0.989 3.011 15 H -0.254 1.254 16 H -0.270 1.270 17 H -0.259 1.259 18 C -0.160 4.160 19 C -0.153 4.153 20 S -0.012 6.012 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.102 0.898 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.291 0.709 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 8.745 1.826 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.321 5.321 3 C -0.048 4.048 4 C -0.052 4.052 5 N -0.266 5.266 6 C -0.142 4.142 7 C -0.083 4.083 8 C -0.207 4.207 9 C 0.079 3.921 10 C -0.501 4.501 11 H 0.111 0.889 12 C -0.184 4.184 13 N -0.443 5.443 14 Si 0.808 3.192 15 H -0.178 1.178 16 H -0.194 1.194 17 H -0.183 1.183 18 C -0.186 4.186 19 C -0.271 4.271 20 S 0.235 5.765 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.120 0.880 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.128 0.872 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.102 0.898 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.217 9.722 1.667 10.728 hybrid contribution 0.466 -1.288 -0.087 1.372 sum -3.752 8.434 1.580 9.365 Atomic orbital electron populations 1.21683 0.76803 1.03406 1.01784 1.45648 1.06178 1.00513 1.79713 1.21928 0.96892 0.83184 1.02821 1.23597 0.90353 0.89774 1.01514 1.65520 1.37700 0.96837 1.26529 1.18478 0.86889 0.93075 1.15772 1.20107 0.99135 0.88735 1.00340 1.20913 0.92529 0.98633 1.08642 1.17835 0.92744 0.92218 0.89340 1.19851 0.96180 0.99285 1.34806 0.88877 1.26904 1.02600 0.97230 0.91711 1.69923 1.25622 1.27026 1.21710 0.85145 0.75643 0.78650 0.79718 1.17758 1.19430 1.18306 1.20323 0.96559 0.91352 1.10408 1.23380 0.98115 0.95456 1.10196 1.83968 1.06709 1.02335 1.83466 0.92987 0.92753 0.87971 0.91624 0.92416 0.87162 0.85802 0.85452 0.89792 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.53 10.55 127.77 1.35 3.88 16 2 N -0.60 -17.79 3.35 -757.40 -2.54 -20.33 16 3 C 0.09 1.94 10.41 127.77 1.33 3.27 16 4 C 0.32 13.07 7.86 179.75 1.41 14.48 16 5 N -0.54 -25.09 9.73 -188.85 -1.84 -26.92 16 6 C -0.03 -1.29 6.94 40.32 0.28 -1.01 16 7 C -0.06 -2.95 10.02 22.49 0.23 -2.73 16 8 C -0.19 -9.13 9.68 22.32 0.22 -8.91 16 9 C 0.08 4.57 5.56 -21.31 -0.12 4.45 16 10 C -0.47 -24.48 9.03 23.33 0.21 -24.27 16 11 H 0.09 4.47 7.90 -2.91 -0.02 4.45 16 12 C 0.03 1.56 5.14 85.22 0.44 1.99 16 13 N -0.82 -42.48 10.96 21.81 0.24 -42.24 16 14 Si 0.99 36.67 29.59 68.60 2.03 38.70 16 15 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 16 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 17 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 18 C -0.16 -8.85 8.70 22.86 0.20 -8.65 16 19 C -0.15 -7.99 6.50 22.84 0.15 -7.84 16 20 S -0.01 -0.49 21.90 -56.49 -1.24 -1.73 16 21 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.05 1.53 7.58 -2.39 -0.02 1.51 16 23 H 0.10 1.56 8.07 -2.38 -0.02 1.55 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.32 7.04 -2.39 -0.02 1.31 16 26 H 0.11 1.47 8.07 -2.39 -0.02 1.45 16 27 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 28 H 0.13 5.49 8.06 -2.91 -0.02 5.46 16 29 H 0.29 13.68 8.30 -92.70 -0.77 12.92 16 30 H 0.11 6.07 6.18 -2.91 -0.02 6.05 16 Total: -1.00 -65.02 272.81 3.50 -61.52 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.15 Total: 16.34 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 5.69 Total: -25.34 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -4.14 Total: -89.49 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -1.24 Total: -1.73 kcal Total: -65.02 3.50 -61.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.335 kcal (2) G-P(sol) polarization free energy of solvation -65.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds