Wall clock time and date at job start Mon Mar 30 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00028 * 3 2 1 5 5 H 1.48499 * 109.47122 * 29.99805 * 3 2 1 6 6 H 1.48498 * 109.47106 * 149.99893 * 3 2 1 7 7 C 1.37877 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.34335 * 125.80959 * 124.99653 * 10 9 7 12 12 N 1.38924 * 107.12782 * 179.97438 * 11 10 9 13 13 C 1.37475 * 139.54308 * 180.02562 * 12 11 10 14 14 C 1.50701 * 121.83604 * 359.95828 * 13 12 11 15 15 C 1.52999 * 117.49850 * 213.61896 * 14 13 12 16 16 C 1.52999 * 60.00113 * 252.50575 * 15 14 13 17 17 C 1.30911 * 116.32642 * 179.97438 * 13 12 11 18 18 S 1.75785 * 109.81629 * 0.27164 * 17 13 12 19 19 C 1.35156 * 106.52501 * 0.02562 * 12 11 10 20 20 N 1.32359 * 108.82239 * 359.97438 * 19 12 11 21 21 H 0.97000 * 119.99893 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47303 * 59.99429 * 9 7 2 23 23 H 1.09007 * 109.46921 * 299.99491 * 9 7 2 24 24 H 1.08006 * 126.43518 * 359.97438 * 11 10 9 25 25 H 1.09004 * 115.55159 * 359.32115 * 14 13 12 26 26 H 1.09002 * 117.49988 * 359.97438 * 15 14 13 27 27 H 1.09005 * 117.50226 * 145.01830 * 15 14 13 28 28 H 1.08997 * 117.50215 * 252.50709 * 16 15 14 29 29 H 1.09000 * 117.51883 * 107.48082 * 16 15 14 30 30 H 1.08002 * 125.08920 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0018 11 6 2.2655 -4.6476 0.8947 12 7 3.3146 -5.4825 0.5310 13 6 3.9211 -6.6432 0.9494 14 6 3.4447 -7.3955 2.1652 15 6 4.4982 -8.1210 3.0046 16 6 3.5319 -8.9226 2.1302 17 6 4.9354 -7.0588 0.2337 18 16 5.2220 -5.9458 -1.0965 19 6 3.8713 -4.9409 -0.5750 20 7 3.2131 -3.8357 -0.8869 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6241 -2.5566 0.8904 24 1 1.6026 -4.7800 1.7371 25 1 2.5997 -6.9515 2.6916 26 1 5.5357 -8.0546 2.6773 27 1 4.3465 -8.1545 4.0836 28 1 2.7444 -9.4834 2.6337 29 1 3.9334 -9.3832 1.2276 30 1 5.5129 -7.9493 0.4336 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259950318.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:43 Heat of formation + Delta-G solvation = 117.480944 kcal Electronic energy + Delta-G solvation = -14985.955106 eV Core-core repulsion = 12489.144797 eV Total energy + Delta-G solvation = -2496.810309 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.14490 -38.46899 -35.30796 -32.96927 -30.23690 -30.03429 -26.86730 -25.04393 -23.22344 -22.74188 -21.73104 -19.50949 -19.26710 -18.23595 -16.27746 -15.96538 -15.51547 -15.00198 -14.74211 -14.43134 -13.83878 -13.46987 -12.48504 -12.31949 -12.18245 -11.92879 -11.68995 -11.38761 -11.05815 -10.93418 -10.73689 -10.66169 -10.42016 -10.03145 -9.82596 -9.41847 -9.19207 -8.37775 -7.99532 -7.25182 -5.95726 -3.95792 1.14518 1.21598 1.83842 2.51685 2.88243 3.39026 3.43979 3.48839 3.59862 3.71361 4.20218 4.48446 4.54413 4.62593 4.83653 4.93822 5.26744 5.27383 5.38121 5.44232 5.52515 5.72641 5.81625 5.92185 6.18365 6.55289 7.19964 7.34827 7.54235 7.65985 8.01882 8.37154 8.56866 9.07954 9.66487 11.15462 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.005323 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.466714 B = 5258.483983 C = 5682.365480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.089 3.911 10 C 0.102 3.898 11 C -0.082 4.082 12 N -0.409 5.409 13 C 0.133 3.867 14 C -0.109 4.109 15 C -0.161 4.161 16 C -0.161 4.161 17 C -0.254 4.254 18 S 0.162 5.838 19 C 0.126 3.874 20 N -0.436 5.436 21 H 0.261 0.739 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.176 0.824 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -18.705 4.684 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.051 3.949 10 C -0.028 4.028 11 C -0.210 4.210 12 N -0.091 5.091 13 C 0.021 3.979 14 C -0.131 4.131 15 C -0.198 4.198 16 C -0.198 4.198 17 C -0.391 4.391 18 S 0.412 5.588 19 C -0.240 4.240 20 N -0.160 5.160 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.193 0.807 25 H 0.137 0.863 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.585 -18.000 3.004 20.613 hybrid contribution -0.742 0.397 1.810 1.996 sum 8.843 -17.603 4.814 20.279 Atomic orbital electron populations 1.69951 1.05957 1.26702 1.51322 1.24975 0.94875 0.99193 0.95430 0.86508 0.79733 0.83115 0.78171 1.20582 1.21297 1.19951 1.21033 0.93281 0.89682 1.49858 0.92268 1.17817 0.90893 0.87676 0.98488 1.21883 0.95303 0.95884 0.89706 1.22637 0.96548 0.94904 1.06935 1.43668 1.25128 1.17776 1.22498 1.18067 0.94872 0.87547 0.97378 1.20641 1.02751 0.94008 0.95663 1.23143 0.95960 1.02393 0.98311 1.23140 1.02593 0.91512 1.02577 1.24467 1.04564 1.07612 1.02485 1.84349 1.28415 1.16084 1.29935 1.26182 1.04381 0.99841 0.93562 1.70665 1.07271 1.10757 1.27276 0.92959 0.94223 0.94458 0.80723 0.86265 0.87992 0.87785 0.87811 0.88003 0.79754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.50 -14.80 9.07 -34.44 -0.31 -15.11 16 8 H 0.06 1.80 7.74 -52.48 -0.41 1.39 16 9 C 0.09 2.41 5.53 -29.04 -0.16 2.25 16 10 C 0.10 2.47 6.27 -83.08 -0.52 1.95 16 11 C -0.08 -1.65 11.85 -15.71 -0.19 -1.83 16 12 N -0.41 -7.53 3.19 -59.54 -0.19 -7.72 16 13 C 0.13 1.86 6.54 -81.75 -0.53 1.32 16 14 C -0.11 -1.15 6.25 -91.77 -0.57 -1.73 16 15 C -0.16 -1.21 9.89 -26.73 -0.26 -1.47 16 16 C -0.16 -1.19 9.90 -26.73 -0.26 -1.45 16 17 C -0.25 -3.01 9.64 29.04 0.28 -2.73 16 18 S 0.16 2.36 23.37 -107.50 -2.51 -0.16 16 19 C 0.13 2.55 8.93 -88.70 -0.79 1.76 16 20 N -0.44 -10.66 11.30 -9.77 -0.11 -10.77 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.04 1.00 8.10 -51.92 -0.42 0.58 16 24 H 0.18 2.95 8.06 -52.48 -0.42 2.53 16 25 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.10 0.70 7.47 -51.93 -0.39 0.32 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.69 7.55 -51.93 -0.39 0.29 16 30 H 0.19 1.46 7.15 -52.49 -0.38 1.08 16 LS Contribution 278.28 15.07 4.19 4.19 Total: -1.00 -33.63 278.28 -9.56 -43.19 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: -3.23 Total: -4.30 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -3.43 Total: -15.51 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.44 Total: -44.90 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.51 Total: -0.16 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.63 -9.56 -43.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259950318.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.670 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds