Wall clock time and date at job start Mon Mar 30 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00028 * 3 2 1 5 5 H 1.48499 * 109.47122 * 29.99805 * 3 2 1 6 6 H 1.48498 * 109.47106 * 149.99893 * 3 2 1 7 7 C 1.37877 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.34335 * 125.80959 * 124.99653 * 10 9 7 12 12 N 1.38924 * 107.12782 * 179.97438 * 11 10 9 13 13 C 1.37475 * 139.54308 * 180.02562 * 12 11 10 14 14 C 1.50701 * 121.83604 * 359.95828 * 13 12 11 15 15 C 1.52999 * 117.49850 * 213.61896 * 14 13 12 16 16 C 1.52999 * 60.00113 * 252.50575 * 15 14 13 17 17 C 1.30911 * 116.32642 * 179.97438 * 13 12 11 18 18 S 1.75785 * 109.81629 * 0.27164 * 17 13 12 19 19 C 1.35156 * 106.52501 * 0.02562 * 12 11 10 20 20 N 1.32359 * 108.82239 * 359.97438 * 19 12 11 21 21 H 0.97000 * 119.99893 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47303 * 59.99429 * 9 7 2 23 23 H 1.09007 * 109.46921 * 299.99491 * 9 7 2 24 24 H 1.08006 * 126.43518 * 359.97438 * 11 10 9 25 25 H 1.09004 * 115.55159 * 359.32115 * 14 13 12 26 26 H 1.09002 * 117.49988 * 359.97438 * 15 14 13 27 27 H 1.09005 * 117.50226 * 145.01830 * 15 14 13 28 28 H 1.08997 * 117.50215 * 252.50709 * 16 15 14 29 29 H 1.09000 * 117.51883 * 107.48082 * 16 15 14 30 30 H 1.08002 * 125.08920 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0018 11 6 2.2655 -4.6476 0.8947 12 7 3.3146 -5.4825 0.5310 13 6 3.9211 -6.6432 0.9494 14 6 3.4447 -7.3955 2.1652 15 6 4.4982 -8.1210 3.0046 16 6 3.5319 -8.9226 2.1302 17 6 4.9354 -7.0588 0.2337 18 16 5.2220 -5.9458 -1.0965 19 6 3.8713 -4.9409 -0.5750 20 7 3.2131 -3.8357 -0.8869 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6241 -2.5566 0.8904 24 1 1.6026 -4.7800 1.7371 25 1 2.5997 -6.9515 2.6916 26 1 5.5357 -8.0546 2.6773 27 1 4.3465 -8.1545 4.0836 28 1 2.7444 -9.4834 2.6337 29 1 3.9334 -9.3832 1.2276 30 1 5.5129 -7.9493 0.4336 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259950318.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:43 Heat of formation + Delta-G solvation = 97.516061 kcal Electronic energy + Delta-G solvation = -14986.820848 eV Core-core repulsion = 12489.144797 eV Total energy + Delta-G solvation = -2497.676051 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.60058 -39.39860 -36.55144 -35.07455 -31.94989 -31.59004 -28.65826 -26.10096 -25.26775 -23.26022 -22.99696 -21.17611 -20.49182 -19.36855 -18.47716 -17.04082 -16.95220 -16.62533 -15.94189 -15.60428 -15.26494 -14.75290 -14.42734 -13.97860 -13.59181 -13.15730 -13.11087 -12.66333 -12.64877 -12.36682 -12.16072 -11.93963 -11.65359 -11.52381 -11.43920 -11.23981 -10.95664 -10.59833 -9.56045 -8.56870 -8.20776 -6.30207 -0.10300 -0.03975 0.71300 1.20228 1.37566 1.40329 1.50995 1.59794 1.96129 2.42962 2.96606 3.10993 3.31097 3.54159 3.82610 4.05305 4.06971 4.17614 4.33626 4.45958 4.64717 4.78452 4.96344 5.05703 5.10913 5.23726 5.26627 5.38406 5.61939 5.72209 5.98366 6.21916 6.77014 6.90704 7.36319 8.90210 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.005323 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.466714 B = 5258.483983 C = 5682.365480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.522 4.522 8 H 0.043 0.957 9 C 0.100 3.900 10 C 0.058 3.942 11 C -0.066 4.066 12 N -0.407 5.407 13 C 0.105 3.895 14 C -0.141 4.141 15 C -0.145 4.145 16 C -0.143 4.143 17 C -0.224 4.224 18 S 0.199 5.801 19 C 0.102 3.898 20 N -0.495 5.495 21 H 0.267 0.733 22 H 0.007 0.993 23 H 0.030 0.970 24 H 0.201 0.799 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.808 -20.957 5.802 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.061 0.939 9 C 0.062 3.938 10 C -0.072 4.072 11 C -0.197 4.197 12 N -0.087 5.087 13 C -0.004 4.004 14 C -0.162 4.162 15 C -0.182 4.182 16 C -0.180 4.180 17 C -0.360 4.360 18 S 0.449 5.551 19 C -0.264 4.264 20 N -0.220 5.220 21 H 0.076 0.924 22 H 0.025 0.975 23 H 0.048 0.952 24 H 0.218 0.782 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.737 -20.296 4.136 23.807 hybrid contribution -1.318 0.912 1.456 2.165 sum 10.419 -19.384 5.592 22.706 Atomic orbital electron populations 1.70052 1.07335 1.27972 1.51503 1.25842 0.95846 1.02801 0.94625 0.85442 0.78483 0.78591 0.78460 1.19973 1.19659 1.19620 1.21229 0.92701 0.91422 1.50661 0.93866 1.17450 0.91150 0.88742 0.96437 1.21406 0.96474 0.96949 0.92331 1.22723 0.96826 0.93941 1.06218 1.43841 1.24280 1.18698 1.21841 1.18713 0.95685 0.86623 0.99422 1.20705 1.04292 0.95804 0.95403 1.23305 0.95940 1.00090 0.98874 1.23301 1.02618 0.89046 1.03014 1.25100 1.03337 1.07665 0.99921 1.84255 1.25331 1.14931 1.30608 1.27023 1.05649 0.99377 0.94332 1.70443 1.08854 1.13744 1.28990 0.92436 0.97531 0.95215 0.78213 0.87359 0.86757 0.86636 0.86570 0.86704 0.74793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 47.06 29.54 68.60 2.03 49.09 16 4 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.52 -32.45 9.07 25.60 0.23 -32.21 16 8 H 0.04 2.76 7.74 -2.91 -0.02 2.73 16 9 C 0.10 5.80 5.53 29.10 0.16 5.97 16 10 C 0.06 2.97 6.27 41.36 0.26 3.23 16 11 C -0.07 -2.75 11.85 82.68 0.98 -1.77 16 12 N -0.41 -14.82 3.19 -342.28 -1.09 -15.91 16 13 C 0.10 2.66 6.54 41.73 0.27 2.93 16 14 C -0.14 -2.56 6.25 -11.54 -0.07 -2.63 16 15 C -0.14 -1.55 9.89 30.59 0.30 -1.24 16 16 C -0.14 -1.48 9.90 30.59 0.30 -1.18 16 17 C -0.22 -4.41 9.64 67.87 0.65 -3.75 16 18 S 0.20 5.38 23.37 -56.49 -1.32 4.06 16 19 C 0.10 4.16 8.93 179.68 1.60 5.77 16 20 N -0.50 -25.45 11.30 -184.82 -2.09 -27.54 16 21 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 22 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.03 1.70 8.10 -2.38 -0.02 1.68 16 24 H 0.20 6.89 8.06 -2.91 -0.02 6.87 16 25 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.11 0.96 7.47 -2.39 -0.02 0.94 16 27 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.92 7.55 -2.39 -0.02 0.90 16 30 H 0.24 2.17 7.15 -2.91 -0.02 2.15 16 Total: -1.00 -77.80 278.28 4.12 -73.68 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: 1.15 Total: -2.02 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 5.16 Total: -24.03 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -2.89 Total: -100.77 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.32 Total: 4.06 kcal Total: -77.80 4.12 -73.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259950318.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.194 kcal (2) G-P(sol) polarization free energy of solvation -77.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds