Wall clock time and date at job start Mon Mar 30 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30846 * 125.89827 * 2 1 4 4 N 1.40086 * 108.20490 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.03926 * 179.97438 * 4 3 2 6 6 F 1.39905 * 109.47025 * 5.02253 * 5 4 3 7 7 F 1.39900 * 109.47180 * 245.02621 * 5 4 3 8 8 F 1.39897 * 109.47384 * 125.02232 * 5 4 3 9 9 C 1.34949 * 107.92308 * 0.25873 * 4 3 2 10 10 C 1.35318 * 107.75055 * 359.57840 * 9 4 3 11 11 C 1.50694 * 126.04508 * 180.16169 * 10 9 4 12 12 H 1.08999 * 109.47236 * 180.30819 * 11 10 9 13 13 C 1.53006 * 109.47017 * 300.30817 * 11 10 9 14 14 C 1.50696 * 109.47160 * 60.30775 * 11 10 9 15 15 H 1.08004 * 120.00013 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00121 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00263 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99981 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46880 * 60.00062 * 18 16 14 20 20 H 1.48499 * 109.47061 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47088 * 300.00078 * 18 16 14 22 22 H 1.08998 * 109.47345 * 89.97447 * 1 2 3 23 23 H 1.09000 * 109.47331 * 209.98586 * 1 2 3 24 24 H 1.09010 * 109.47059 * 329.97791 * 1 2 3 25 25 H 1.08003 * 126.12503 * 179.73653 * 9 4 3 26 26 H 1.08996 * 109.46751 * 299.99835 * 13 11 10 27 27 H 1.08999 * 109.47116 * 59.99929 * 13 11 10 28 28 H 1.08997 * 109.46964 * 179.97438 * 13 11 10 29 29 H 0.96988 * 120.00346 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7899 1.5008 -0.0013 6 9 4.3887 2.8361 0.1141 7 9 5.4948 1.3275 -1.1973 8 9 5.6143 1.1666 1.0784 9 6 3.6142 -0.7153 -0.0067 10 6 2.3271 -1.1330 -0.0005 11 6 1.8599 -2.5657 -0.0006 12 1 0.7702 -2.5925 -0.0002 13 6 2.3870 -3.2740 -1.2502 14 6 2.3799 -3.2638 1.2295 15 1 2.9884 -2.7240 1.9401 16 6 2.0799 -4.5918 1.4473 17 7 1.3394 -5.2492 0.5818 18 14 2.7252 -5.4573 2.9718 19 1 2.2136 -4.7702 4.1849 20 1 2.2647 -6.8690 2.9718 21 1 4.2097 -5.4203 2.9710 22 1 -0.3634 0.0005 -1.0276 23 1 -0.3634 -0.8901 0.5136 24 1 -0.3634 0.8899 0.5142 25 1 4.4891 -1.3485 -0.0128 26 1 2.0108 -2.7690 -2.1399 27 1 3.4767 -3.2472 -1.2506 28 1 2.0494 -4.3103 -1.2500 29 1 1.1287 -6.1835 0.7349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259967969.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:00 Heat of formation + Delta-G solvation = -73.064358 kcal Electronic energy + Delta-G solvation = -18316.856366 eV Core-core repulsion = 14827.173782 eV Total energy + Delta-G solvation = -3489.682585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.26084 -47.93222 -47.90111 -40.87212 -34.68056 -33.01065 -31.19040 -28.68398 -28.04577 -25.16540 -24.58436 -22.12233 -20.07729 -19.50138 -18.86514 -18.64218 -17.74033 -16.13877 -14.86963 -14.86496 -14.69806 -14.37242 -14.33315 -14.31901 -14.05159 -14.03487 -13.69369 -12.89054 -12.67874 -12.47628 -12.13324 -11.70792 -11.56837 -11.00491 -10.90474 -10.79231 -10.33173 -10.10875 -9.49840 -9.19232 -9.03956 -8.40107 -7.85213 -6.04014 -4.10761 1.51104 1.97952 2.94944 3.28319 3.30317 3.34572 3.39731 3.72831 4.21011 4.41028 4.99028 5.22104 5.27176 5.55934 5.97939 6.07663 6.19878 6.32987 6.54289 6.81740 6.89370 6.94961 7.16688 7.34831 7.65041 7.80635 7.98866 8.06160 8.36823 8.91180 9.54317 11.01409 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.007023 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.046490 B = 3985.978070 C = 4444.753060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.098 3.902 3 N -0.288 5.288 4 N -0.457 5.457 5 C 0.699 3.301 6 F -0.146 7.146 7 F -0.160 7.160 8 F -0.157 7.157 9 C 0.054 3.946 10 C -0.149 4.149 11 C 0.106 3.894 12 H 0.042 0.958 13 C -0.132 4.132 14 C -0.510 4.510 15 H 0.054 0.946 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.178 0.822 26 H 0.008 0.992 27 H 0.025 0.975 28 H 0.086 0.914 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 9.853 -2.216 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 N -0.108 5.108 4 N -0.254 5.254 5 C 0.563 3.437 6 F -0.127 7.127 7 F -0.142 7.142 8 F -0.138 7.138 9 C -0.082 4.082 10 C -0.159 4.159 11 C 0.086 3.914 12 H 0.060 0.940 13 C -0.190 4.190 14 C -0.548 4.548 15 H 0.072 0.928 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.195 0.805 26 H 0.027 0.973 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.725 11.027 -2.242 11.853 hybrid contribution 0.803 -1.245 0.876 1.721 sum 4.529 9.782 -1.366 10.866 Atomic orbital electron populations 1.20244 0.86056 1.03719 1.03017 1.22689 0.97211 0.90604 0.96673 1.77360 0.84051 1.22496 1.26899 1.49101 1.04630 1.05594 1.66115 1.17277 0.76205 0.75682 0.74578 1.93265 1.90487 1.33205 1.95772 1.93299 1.79000 1.95114 1.46749 1.93306 1.72526 1.92348 1.55664 1.22291 1.01019 0.81390 1.03537 1.21022 0.90345 0.98636 1.05881 1.17339 0.96676 0.82769 0.94613 0.94045 1.21798 0.98353 1.03500 0.95302 1.21105 1.32493 0.95273 1.05922 0.92751 1.24930 0.95027 0.97377 0.96421 1.69857 1.37542 1.10123 1.35256 0.86668 0.79291 0.78553 0.83560 1.20297 1.21277 1.20317 0.90422 0.89102 0.91258 0.80479 0.97251 0.95621 0.89534 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.11 36.00 0.36 -0.74 15 2 C 0.10 1.88 7.22 -82.40 -0.59 1.28 15 3 N -0.29 -5.59 12.24 33.67 0.41 -5.18 15 4 N -0.46 -8.45 3.88 -65.91 -0.26 -8.71 15 5 C 0.70 10.85 3.98 59.84 0.24 11.09 15 6 F -0.15 -2.21 17.15 2.25 0.04 -2.18 15 7 F -0.16 -2.31 17.50 2.25 0.04 -2.27 15 8 F -0.16 -2.33 17.40 2.25 0.04 -2.29 15 9 C 0.05 1.04 10.76 -17.22 -0.19 0.86 15 10 C -0.15 -3.14 4.78 -105.05 -0.50 -3.64 15 11 C 0.11 2.49 2.62 -92.93 -0.24 2.24 15 12 H 0.04 1.02 6.91 -51.93 -0.36 0.67 15 13 C -0.13 -3.01 8.84 37.16 0.33 -2.68 15 14 C -0.51 -13.25 8.40 -34.44 -0.29 -13.54 15 15 H 0.05 1.43 7.72 -52.48 -0.40 1.02 15 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 17 N -0.89 -24.13 11.32 55.43 0.63 -23.50 15 18 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 15 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.09 1.43 7.23 -51.93 -0.38 1.06 15 24 H 0.07 0.93 8.14 -51.92 -0.42 0.51 15 25 H 0.18 3.16 8.06 -52.48 -0.42 2.74 15 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 15 27 H 0.02 0.55 8.00 -51.93 -0.42 0.14 15 28 H 0.09 2.18 6.07 -51.93 -0.32 1.86 15 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 LS Contribution 269.09 15.07 4.06 4.06 Total: -1.00 -27.60 269.09 -3.74 -31.34 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -2.70 Total: -3.30 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.98 Total: -3.54 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.78 Total: -37.39 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.12 Total: -6.74 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.60 -3.74 -31.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967969.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.723 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds