Wall clock time and date at job start Mon Mar 30 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46859 * 2 1 4 4 C 1.50695 * 109.47522 * 239.99866 * 2 1 3 5 5 H 1.08005 * 120.00389 * 240.00702 * 4 2 1 6 6 C 1.37872 * 119.99877 * 59.99603 * 4 2 1 7 7 N 1.31513 * 120.00572 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99970 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46923 * 60.00700 * 8 6 4 10 10 H 1.48494 * 109.47200 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47349 * 300.00684 * 8 6 4 12 12 C 1.50705 * 109.47064 * 119.99571 * 2 1 3 13 13 C 1.31760 * 122.54831 * 59.97680 * 12 2 1 14 14 S 1.75298 * 111.41296 * 179.80560 * 13 12 2 15 15 C 1.75904 * 92.19558 * 0.28957 * 14 13 12 16 16 C 1.39845 * 130.51368 * 179.97438 * 15 14 13 17 17 C 1.37919 * 120.13682 * 179.66975 * 16 15 14 18 18 O 1.35949 * 119.96101 * 179.97438 * 17 16 15 19 19 C 1.39288 * 120.06962 * 0.02562 * 17 16 15 20 20 C 1.36032 * 120.53395 * 0.02562 * 19 17 16 21 21 C 1.39729 * 109.68463 * 359.71550 * 15 14 13 22 22 H 1.08999 * 109.46692 * 59.99861 * 1 2 3 23 23 H 1.09000 * 109.46859 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47073 * 300.00195 * 1 2 3 25 25 H 0.96996 * 120.00949 * 179.97438 * 7 6 4 26 26 H 1.08009 * 124.29630 * 359.97438 * 13 12 2 27 27 H 1.07995 * 119.92752 * 359.69319 * 16 15 14 28 28 H 0.96699 * 113.99580 * 90.00490 * 18 17 16 29 29 H 1.08000 * 119.73031 * 179.97438 * 19 17 16 30 30 H 1.07994 * 119.72862 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.8259 -2.5204 -4.0076 10 1 1.8272 -0.4201 -5.2203 11 1 3.8065 -1.1211 -4.0080 12 6 2.0324 -0.7103 1.2306 13 6 1.7447 -1.9699 1.4891 14 16 2.4823 -2.5001 2.9883 15 6 3.2056 -0.9215 3.2696 16 6 4.0096 -0.4645 4.3185 17 6 4.4725 0.8347 4.3208 18 8 5.2535 1.2754 5.3426 19 6 4.1397 1.6960 3.2779 20 6 3.3578 1.2676 2.2506 21 6 2.8713 -0.0575 2.2236 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7095 1.1617 -3.4844 26 1 1.1344 -2.5971 0.8560 27 1 4.2689 -1.1304 5.1282 28 1 6.2008 1.1467 5.1973 29 1 4.5049 2.7123 3.2855 30 1 3.1081 1.9462 1.4485 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:52 Heat of formation + Delta-G solvation = -10.838080 kcal Electronic energy + Delta-G solvation = -15251.599630 eV Core-core repulsion = 12716.932240 eV Total energy + Delta-G solvation = -2534.667391 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65671 -37.50472 -35.18339 -32.85201 -30.93954 -29.75569 -27.75173 -25.19047 -23.55277 -22.43202 -21.42782 -18.65128 -18.49114 -16.88390 -16.18741 -15.45186 -15.24536 -14.83463 -14.54367 -13.58511 -13.28580 -13.08861 -12.71612 -12.31180 -11.94510 -11.82331 -11.41113 -11.09267 -10.96748 -10.82079 -10.54250 -10.21852 -10.15500 -10.09660 -9.50487 -9.28554 -8.89415 -8.42337 -7.97262 -7.13953 -6.06596 -4.13766 1.07901 1.48149 1.99189 2.55089 2.86595 3.28109 3.32883 3.36064 3.93252 4.33884 4.38971 5.02981 5.15345 5.24267 5.36974 5.63061 5.80901 6.05942 6.16834 6.29988 6.47894 6.58206 6.76340 6.81800 6.93391 6.98386 7.16801 7.23880 7.64743 7.70199 7.87028 8.02352 8.31787 8.88166 9.51090 10.98925 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.006627 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.620482 B = 4224.421664 C = 4629.574185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.091 3.909 3 H 0.038 0.962 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.037 4.037 13 C -0.197 4.197 14 S 0.033 5.967 15 C -0.124 4.124 16 C -0.116 4.116 17 C 0.107 3.893 18 O -0.499 6.499 19 C -0.151 4.151 20 C -0.051 4.051 21 C -0.067 4.067 22 H 0.087 0.913 23 H 0.028 0.972 24 H 0.010 0.990 25 H 0.262 0.738 26 H 0.166 0.834 27 H 0.126 0.874 28 H 0.386 0.614 29 H 0.129 0.871 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -1.234 10.592 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.070 3.930 3 H 0.056 0.944 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.047 4.047 13 C -0.329 4.329 14 S 0.296 5.704 15 C -0.239 4.239 16 C -0.139 4.139 17 C 0.060 3.940 18 O -0.309 6.309 19 C -0.172 4.172 20 C -0.070 4.070 21 C -0.076 4.076 22 H 0.106 0.894 23 H 0.047 0.953 24 H 0.029 0.971 25 H 0.072 0.928 26 H 0.183 0.817 27 H 0.144 0.856 28 H 0.242 0.758 29 H 0.147 0.853 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.720 -2.406 11.430 12.598 hybrid contribution 0.795 0.634 -1.819 2.084 sum 5.515 -1.772 9.611 11.222 Atomic orbital electron populations 1.21805 0.97344 0.99398 1.00428 1.17659 0.92772 0.95313 0.87220 0.94439 1.21085 1.31442 1.12467 0.89764 0.92460 1.24942 0.94971 0.94980 0.98924 1.69861 1.36486 1.22775 1.23660 0.86630 0.79259 0.79794 0.82201 1.20217 1.21222 1.20251 1.20502 0.94372 0.93553 0.96263 1.24641 1.08792 0.99634 0.99830 1.83695 1.52716 1.10744 1.23225 1.22480 1.04055 0.98313 0.99089 1.20523 1.00411 0.95233 0.97755 1.18112 0.96323 0.91224 0.88328 1.84829 1.21018 1.84029 1.40978 1.20861 1.01945 1.00365 0.94072 1.20765 0.94640 0.94111 0.97533 1.19516 0.99481 0.94424 0.94170 0.89442 0.95260 0.97131 0.92789 0.81694 0.85621 0.75841 0.85284 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.80 37.16 0.33 -2.78 16 2 C 0.09 2.22 2.56 -92.92 -0.24 1.98 16 3 H 0.04 0.96 6.88 -51.93 -0.36 0.61 16 4 C -0.51 -13.52 8.30 -34.44 -0.29 -13.80 16 5 H 0.06 1.53 7.63 -52.48 -0.40 1.13 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C -0.04 -0.80 4.80 -103.63 -0.50 -1.30 16 13 C -0.20 -3.89 9.81 28.85 0.28 -3.61 16 14 S 0.03 0.55 23.23 -107.50 -2.50 -1.94 16 15 C -0.12 -2.21 6.48 -38.42 -0.25 -2.46 16 16 C -0.12 -1.79 10.01 -39.10 -0.39 -2.18 16 17 C 0.11 1.55 6.69 -39.31 -0.26 1.29 16 18 O -0.50 -6.01 13.50 -19.58 -0.26 -6.28 16 19 C -0.15 -2.26 9.89 -39.98 -0.40 -2.66 16 20 C -0.05 -0.89 9.70 -39.26 -0.38 -1.27 16 21 C -0.07 -1.31 6.02 -105.35 -0.63 -1.95 16 22 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 23 H 0.03 0.65 7.69 -51.93 -0.40 0.25 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 26 H 0.17 3.19 7.88 -52.48 -0.41 2.78 16 27 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.39 2.70 9.06 45.56 0.41 3.11 16 29 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.14 2.34 7.14 -52.49 -0.37 1.97 16 LS Contribution 272.19 15.07 4.10 4.10 Total: -1.00 -28.89 272.19 -8.12 -37.02 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -2.25 Total: 2.34 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -2.82 Total: -27.13 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.63 Total: -23.91 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.26 Total: -6.28 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.50 Total: -1.94 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.89 -8.12 -37.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.178 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds