Wall clock time and date at job start Mon Mar 30 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46859 * 2 1 4 4 C 1.50695 * 109.47522 * 239.99866 * 2 1 3 5 5 H 1.08005 * 120.00389 * 240.00702 * 4 2 1 6 6 C 1.37872 * 119.99877 * 59.99603 * 4 2 1 7 7 N 1.31513 * 120.00572 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99970 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46923 * 60.00700 * 8 6 4 10 10 H 1.48494 * 109.47200 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47349 * 300.00684 * 8 6 4 12 12 C 1.50705 * 109.47064 * 119.99571 * 2 1 3 13 13 C 1.31760 * 122.54831 * 59.97680 * 12 2 1 14 14 S 1.75298 * 111.41296 * 179.80560 * 13 12 2 15 15 C 1.75904 * 92.19558 * 0.28957 * 14 13 12 16 16 C 1.39845 * 130.51368 * 179.97438 * 15 14 13 17 17 C 1.37919 * 120.13682 * 179.66975 * 16 15 14 18 18 O 1.35949 * 119.96101 * 179.97438 * 17 16 15 19 19 C 1.39288 * 120.06962 * 0.02562 * 17 16 15 20 20 C 1.36032 * 120.53395 * 0.02562 * 19 17 16 21 21 C 1.39729 * 109.68463 * 359.71550 * 15 14 13 22 22 H 1.08999 * 109.46692 * 59.99861 * 1 2 3 23 23 H 1.09000 * 109.46859 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47073 * 300.00195 * 1 2 3 25 25 H 0.96996 * 120.00949 * 179.97438 * 7 6 4 26 26 H 1.08009 * 124.29630 * 359.97438 * 13 12 2 27 27 H 1.07995 * 119.92752 * 359.69319 * 16 15 14 28 28 H 0.96699 * 113.99580 * 90.00490 * 18 17 16 29 29 H 1.08000 * 119.73031 * 179.97438 * 19 17 16 30 30 H 1.07994 * 119.72862 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.8259 -2.5204 -4.0076 10 1 1.8272 -0.4201 -5.2203 11 1 3.8065 -1.1211 -4.0080 12 6 2.0324 -0.7103 1.2306 13 6 1.7447 -1.9699 1.4891 14 16 2.4823 -2.5001 2.9883 15 6 3.2056 -0.9215 3.2696 16 6 4.0096 -0.4645 4.3185 17 6 4.4725 0.8347 4.3208 18 8 5.2535 1.2754 5.3426 19 6 4.1397 1.6960 3.2779 20 6 3.3578 1.2676 2.2506 21 6 2.8713 -0.0575 2.2236 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7095 1.1617 -3.4844 26 1 1.1344 -2.5971 0.8560 27 1 4.2689 -1.1304 5.1282 28 1 6.2008 1.1467 5.1973 29 1 4.5049 2.7123 3.2855 30 1 3.1081 1.9462 1.4485 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259973001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:52 Heat of formation + Delta-G solvation = -27.819331 kcal Electronic energy + Delta-G solvation = -15252.335993 eV Core-core repulsion = 12716.932240 eV Total energy + Delta-G solvation = -2535.403753 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90783 -38.77988 -36.69242 -34.61142 -32.38198 -31.37394 -29.14514 -27.22869 -25.07805 -23.70751 -22.98759 -20.14340 -19.75522 -18.32438 -18.00367 -16.85360 -16.60920 -16.31068 -15.94053 -15.01581 -14.91792 -14.52733 -14.34807 -13.73237 -13.53749 -13.23021 -13.11546 -12.86289 -12.81750 -12.33753 -12.20732 -12.06710 -11.72397 -11.31198 -11.26283 -11.05080 -10.47958 -10.43810 -9.28796 -8.51978 -8.09687 -6.24657 -0.23699 0.22248 0.65549 1.09116 1.38817 1.42490 1.44894 1.51530 2.42392 2.65072 3.16779 3.27244 3.76194 3.86372 4.12931 4.35862 4.49947 4.72586 4.73525 4.86470 4.92094 5.09844 5.17478 5.20120 5.30531 5.43397 5.56113 5.61951 5.72885 5.99415 6.03226 6.32490 6.82366 6.85959 7.42996 8.93598 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.006627 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.620482 B = 4224.421664 C = 4629.574185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.092 3.908 3 H 0.012 0.988 4 C -0.523 4.523 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.274 1.274 12 C -0.061 4.061 13 C -0.210 4.210 14 S 0.087 5.913 15 C -0.137 4.137 16 C -0.118 4.118 17 C 0.125 3.875 18 O -0.498 6.498 19 C -0.142 4.142 20 C -0.070 4.070 21 C -0.100 4.100 22 H 0.063 0.937 23 H 0.032 0.968 24 H 0.022 0.978 25 H 0.263 0.737 26 H 0.161 0.839 27 H 0.151 0.849 28 H 0.413 0.587 29 H 0.156 0.844 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.891 -1.788 12.233 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.030 0.970 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.200 1.200 12 C -0.071 4.071 13 C -0.343 4.343 14 S 0.351 5.649 15 C -0.252 4.252 16 C -0.141 4.141 17 C 0.078 3.922 18 O -0.311 6.311 19 C -0.163 4.163 20 C -0.089 4.089 21 C -0.109 4.109 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.179 0.821 27 H 0.169 0.831 28 H 0.273 0.727 29 H 0.174 0.826 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.233 -2.966 13.083 14.792 hybrid contribution 0.419 0.861 -2.190 2.390 sum 6.651 -2.105 10.893 12.936 Atomic orbital electron populations 1.21645 0.97235 0.99301 0.99750 1.17470 0.92917 0.94126 0.88376 0.96976 1.21340 1.31323 1.12367 0.91049 0.93183 1.25662 0.95183 0.95661 1.01594 1.69984 1.37362 1.23879 1.24176 0.85698 0.78690 0.78891 0.78927 1.19617 1.20752 1.19975 1.20325 0.96221 0.94385 0.96191 1.24737 1.08680 0.99281 1.01572 1.83353 1.51533 1.09649 1.20344 1.22722 1.04636 0.98516 0.99374 1.20814 0.99611 0.96102 0.97621 1.18106 0.95600 0.90589 0.87908 1.84773 1.22918 1.83690 1.39737 1.21123 1.00409 1.01672 0.93093 1.20799 0.96015 0.93580 0.98550 1.19553 1.00815 0.95730 0.94774 0.91867 0.94933 0.95864 0.92798 0.82125 0.83091 0.72698 0.82647 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.80 71.98 0.63 -5.29 16 2 C 0.09 4.65 2.56 -12.28 -0.03 4.62 16 3 H 0.01 0.66 6.88 -2.39 -0.02 0.65 16 4 C -0.52 -28.52 8.30 25.60 0.21 -28.31 16 5 H 0.05 2.73 7.63 -2.91 -0.02 2.71 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -51.81 11.32 21.45 0.24 -51.57 16 8 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 C -0.06 -2.68 4.80 -18.74 -0.09 -2.77 16 13 C -0.21 -8.36 9.81 67.08 0.66 -7.70 16 14 S 0.09 2.82 23.23 -56.49 -1.31 1.50 16 15 C -0.14 -4.66 6.48 23.02 0.15 -4.51 16 16 C -0.12 -3.28 10.01 22.58 0.23 -3.05 16 17 C 0.13 3.22 6.69 22.45 0.15 3.37 16 18 O -0.50 -9.78 13.50 -92.98 -1.26 -11.03 16 19 C -0.14 -3.95 9.89 22.01 0.22 -3.73 16 20 C -0.07 -2.45 9.70 22.48 0.22 -2.23 16 21 C -0.10 -3.94 6.02 -20.33 -0.12 -4.07 16 22 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 23 H 0.03 1.50 7.69 -2.39 -0.02 1.48 16 24 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.16 6.33 7.88 -2.91 -0.02 6.31 16 27 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.41 3.77 9.06 -74.06 -0.67 3.09 16 29 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.12 4.51 7.14 -2.91 -0.02 4.49 16 Total: -1.00 -62.36 272.19 2.87 -59.49 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.50 Total: 8.69 kcal Atomic # 6 Polarization: -54.91 SS G_CDS: 2.67 Total: -52.24 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.24 Total: -51.57 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.26 Total: -11.03 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.31 Total: 1.50 kcal Total: -62.36 2.87 -59.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.670 kcal (2) G-P(sol) polarization free energy of solvation -62.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds