Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 120.00332 * 2 1 4 4 C 1.37919 * 119.99628 * 179.97438 * 2 1 3 5 5 N 1.28806 * 124.76223 * 359.97438 * 4 2 1 6 6 C 1.34931 * 117.89096 * 179.97438 * 5 4 2 7 7 C 1.40405 * 128.63130 * 179.71985 * 6 5 4 8 8 C 1.39948 * 120.08321 * 179.83049 * 7 6 5 9 9 C 1.41264 * 119.97523 * 180.21567 * 8 7 6 10 10 H 1.08000 * 120.00138 * 150.30552 * 9 8 7 11 11 C 1.39863 * 120.00063 * 330.29515 * 9 8 7 12 12 N 1.30887 * 119.99669 * 161.56288 * 11 9 8 13 13 Si 1.86799 * 119.99965 * 341.56826 * 11 9 8 14 14 H 1.48506 * 109.47028 * 95.41092 * 13 11 9 15 15 H 1.48500 * 109.46881 * 215.41347 * 13 11 9 16 16 H 1.48503 * 109.47039 * 335.41541 * 13 11 9 17 17 C 1.41102 * 120.04497 * 0.47194 * 8 7 6 18 18 C 1.35938 * 119.89166 * 359.76049 * 17 8 7 19 19 C 1.39905 * 120.68359 * 0.02562 * 18 17 8 20 20 S 1.75776 * 124.75100 * 179.97438 * 4 2 1 21 21 H 1.09003 * 109.46547 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47089 * 299.99968 * 1 2 3 23 23 H 1.08997 * 109.47206 * 60.00250 * 1 2 3 24 24 H 1.09007 * 109.46941 * 270.00559 * 3 2 1 25 25 H 1.09003 * 109.47114 * 29.99497 * 3 2 1 26 26 H 1.08993 * 109.47574 * 149.99995 * 3 2 1 27 27 H 1.08001 * 119.96214 * 0.29364 * 7 6 5 28 28 H 0.97004 * 120.00044 * 179.97438 * 12 11 9 29 29 H 1.07993 * 120.05283 * 179.74450 * 17 8 7 30 30 H 1.07994 * 119.65903 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1546 -1.1945 0.0005 5 7 1.6053 -2.3595 0.0015 6 6 2.4148 -3.4390 0.0014 7 6 2.0633 -4.7983 0.0077 8 6 3.0600 -5.7807 0.0028 9 6 2.7037 -7.1477 0.0045 10 1 3.3514 -7.8752 -0.4620 11 6 1.5122 -7.5590 0.6106 12 7 0.9970 -8.7256 0.3161 13 14 0.6561 -6.4434 1.8402 14 1 -0.3938 -5.6552 1.1461 15 1 0.0326 -7.2680 2.9062 16 1 1.6491 -5.5200 2.4457 17 6 4.4205 -5.4067 0.0015 18 6 4.7614 -4.0908 0.0002 19 6 3.7757 -3.0980 0.0006 20 16 3.9063 -1.3402 0.0000 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.3792 1.5833 -1.0277 25 1 1.6085 2.0283 0.5138 26 1 3.1499 1.1383 0.5138 27 1 1.0224 -5.0862 0.0088 28 1 0.1708 -9.0112 0.7367 29 1 5.1898 -6.1647 0.0019 30 1 5.8039 -3.8088 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260008119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = 37.904360 kcal Electronic energy + Delta-G solvation = -15271.509621 eV Core-core repulsion = 12771.248612 eV Total energy + Delta-G solvation = -2500.261009 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76995 -38.78464 -36.72706 -35.20147 -32.21611 -30.53477 -29.21691 -27.24425 -26.78122 -23.71819 -22.96025 -21.29649 -19.43787 -19.09822 -17.40990 -17.24451 -16.82407 -16.50579 -15.74537 -15.37824 -14.96556 -14.79316 -14.76671 -14.29466 -13.55081 -13.43836 -13.28707 -12.99783 -12.87601 -12.71572 -12.61443 -12.21951 -11.91095 -11.57610 -11.14332 -10.60128 -10.40201 -10.26480 -8.99320 -8.91649 -8.46918 -6.55603 -0.02679 0.23878 0.57854 0.95519 1.23854 1.25365 1.42574 1.79255 1.91642 2.08680 2.52656 3.39404 3.64292 4.05081 4.25997 4.37223 4.47350 4.56462 4.68235 4.69824 4.77300 4.79893 4.93034 5.13943 5.24586 5.43781 5.55294 5.73734 5.82084 5.99730 6.07303 6.24022 6.56799 6.75532 7.07916 8.07965 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.029844 B = 0.007611 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.002231 B = 3677.888038 C = 4427.334956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.589 5.589 3 C 0.088 3.912 4 C 0.369 3.631 5 N -0.596 5.596 6 C 0.152 3.848 7 C -0.250 4.250 8 C 0.093 3.907 9 C -0.467 4.467 10 H 0.077 0.923 11 C 0.060 3.940 12 N -0.833 5.833 13 Si 0.960 3.040 14 H -0.275 1.275 15 H -0.270 1.270 16 H -0.264 1.264 17 C -0.188 4.188 18 C -0.031 4.031 19 C -0.305 4.305 20 S 0.046 5.954 21 H 0.057 0.943 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.296 0.704 29 H 0.132 0.868 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 18.466 1.325 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.309 5.309 3 C -0.054 4.054 4 C -0.007 4.007 5 N -0.324 5.324 6 C 0.036 3.964 7 C -0.275 4.275 8 C 0.088 3.912 9 C -0.497 4.497 10 H 0.095 0.905 11 C -0.157 4.157 12 N -0.459 5.459 13 Si 0.786 3.214 14 H -0.202 1.202 15 H -0.196 1.196 16 H -0.189 1.189 17 C -0.209 4.209 18 C -0.053 4.053 19 C -0.423 4.423 20 S 0.292 5.708 21 H 0.076 0.924 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.150 0.850 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.601 19.088 1.328 19.201 hybrid contribution -0.976 -1.174 0.295 1.555 sum 0.624 17.914 1.623 17.998 Atomic orbital electron populations 1.21838 0.76847 1.03245 1.03038 1.46049 1.06578 1.00911 1.77403 1.22065 0.97176 0.82636 1.03489 1.24047 0.92123 0.89667 0.94892 1.66154 1.38017 0.97317 1.30914 1.18614 0.87905 0.92034 0.97875 1.20339 0.97867 0.89473 1.19784 1.17631 0.92328 0.92543 0.88698 1.19478 1.04709 0.92641 1.32835 0.90516 1.26608 0.95796 0.96121 0.97143 1.69720 1.18563 1.21017 1.36557 0.85547 0.78999 0.78187 0.78694 1.20191 1.19608 1.18866 1.21025 0.95351 0.95495 1.09052 1.19949 0.97562 0.90829 0.96936 1.23174 0.97039 0.96278 1.25841 1.83619 1.03693 1.00733 1.82799 0.92374 0.89964 0.90069 0.90969 0.87032 0.91303 0.89114 0.89310 0.85040 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.08 10.75 127.77 1.37 3.46 16 2 N -0.59 -15.32 3.36 -757.60 -2.55 -17.86 16 3 C 0.09 1.37 10.46 127.77 1.34 2.71 16 4 C 0.37 13.33 7.87 179.80 1.41 14.74 16 5 N -0.60 -27.06 9.51 -189.44 -1.80 -28.86 16 6 C 0.15 7.56 6.92 39.69 0.27 7.84 16 7 C -0.25 -13.47 7.22 23.21 0.17 -13.30 16 8 C 0.09 4.90 5.10 -21.42 -0.11 4.79 16 9 C -0.47 -26.21 9.54 23.41 0.22 -25.99 16 10 H 0.08 4.44 8.06 -2.91 -0.02 4.42 16 11 C 0.06 3.30 5.39 85.23 0.46 3.76 16 12 N -0.83 -45.73 13.93 21.81 0.30 -45.42 16 13 Si 0.96 46.51 24.52 68.60 1.68 48.20 16 14 H -0.28 -13.55 6.71 99.48 0.67 -12.88 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.26 -13.47 6.87 99.48 0.68 -12.79 16 17 C -0.19 -8.59 9.72 22.44 0.22 -8.37 16 18 C -0.03 -1.26 9.98 22.14 0.22 -1.04 16 19 C -0.31 -13.37 6.55 23.17 0.15 -13.21 16 20 S 0.05 1.55 21.88 -56.49 -1.24 0.31 16 21 H 0.06 1.71 7.09 -2.39 -0.02 1.69 16 22 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.11 1.02 8.07 -2.39 -0.02 1.00 16 26 H 0.07 1.11 7.03 -2.39 -0.02 1.10 16 27 H 0.09 5.08 4.70 -2.91 -0.01 5.07 16 28 H 0.30 14.64 8.30 -92.71 -0.77 13.87 16 29 H 0.13 5.37 8.06 -2.91 -0.02 5.35 16 30 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -67.61 267.17 3.23 -64.38 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.09 Total: 3.87 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 5.73 Total: -24.61 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -4.04 Total: -92.15 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.68 Total: 48.20 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.24 Total: 0.31 kcal Total: -67.61 3.23 -64.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260008119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.287 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds