Wall clock time and date at job start Mon Mar 30 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.38264 * 119.99636 * 269.72554 * 10 9 7 12 12 C 1.38212 * 119.99339 * 179.81329 * 11 10 9 13 13 C 1.38256 * 120.00437 * 0.39187 * 12 11 10 14 14 C 1.38209 * 119.99886 * 359.86230 * 13 12 11 15 15 C 1.50699 * 120.00022 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.60156 * 180.68212 * 15 14 13 17 17 C 1.52935 * 109.60474 * 60.35276 * 15 14 13 18 18 C 1.53708 * 112.49126 * 209.96852 * 17 15 14 19 19 S 1.83394 * 104.96747 * 2.82679 * 18 17 15 20 20 C 1.55157 * 109.60441 * 300.99802 * 15 14 13 21 21 C 1.38209 * 120.00185 * 90.00040 * 10 9 7 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.07994 * 120.00453 * 359.97438 * 11 10 9 26 26 H 1.08006 * 119.99897 * 180.23095 * 12 11 10 27 27 H 1.08002 * 119.99747 * 179.83196 * 13 12 11 28 28 H 1.08998 * 108.88643 * 330.76359 * 17 15 14 29 29 H 1.09000 * 108.88467 * 89.31848 * 17 15 14 30 30 H 1.08998 * 110.34195 * 121.69755 * 18 17 15 31 31 H 1.09005 * 110.34354 * 243.95525 * 18 17 15 32 32 H 1.09003 * 111.13176 * 279.28467 * 20 15 14 33 33 H 1.09003 * 111.12419 * 43.45739 * 20 15 14 34 34 H 1.08005 * 119.99841 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.6762 -4.1742 -1.1950 12 6 3.5773 -5.2222 -1.1938 13 6 4.0268 -5.7461 0.0041 14 6 3.5771 -5.2201 1.2004 15 6 4.0665 -5.7916 2.5061 16 1 3.5977 -5.2621 3.3356 17 6 5.5859 -5.6414 2.5946 18 6 6.2395 -6.7560 3.4271 19 16 4.8586 -7.8674 3.8976 20 6 3.7075 -7.2992 2.5817 21 6 2.6786 -4.1693 1.1993 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.3223 -3.7674 -2.1307 26 1 3.9285 -5.6335 -2.1287 27 1 4.7288 -6.5668 0.0049 28 1 6.0018 -5.6632 1.5873 29 1 5.8193 -4.6796 3.0513 30 1 6.9730 -7.2958 2.8282 31 1 6.7096 -6.3381 4.3173 32 1 2.6695 -7.4414 2.8824 33 1 3.9127 -7.7997 1.6354 34 1 2.3272 -3.7581 2.1342 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:29 Heat of formation + Delta-G solvation = -4.034683 kcal Electronic energy + Delta-G solvation = -15299.653011 eV Core-core repulsion = 12901.113733 eV Total energy + Delta-G solvation = -2398.539279 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32480 -36.29446 -33.68159 -31.23741 -30.92833 -28.83881 -26.67951 -25.05170 -23.29384 -21.91953 -21.39480 -19.16650 -17.01832 -16.56318 -16.28474 -15.58319 -14.65704 -14.47610 -13.85339 -13.81128 -13.63415 -13.28245 -12.73917 -12.44896 -12.17040 -12.06063 -11.97435 -11.46391 -11.31086 -11.20852 -10.86464 -10.66409 -10.44049 -10.19214 -10.07525 -9.80170 -9.00118 -8.42191 -8.32094 -7.86860 -7.84040 -6.42655 -4.14262 1.73448 1.77450 1.96595 2.24291 3.40766 3.42089 3.61135 4.19559 4.48966 4.53600 4.57283 4.83062 4.93839 5.07292 5.18629 5.30357 5.34044 5.42190 5.51413 5.54875 5.63054 5.81084 5.91877 5.95763 6.01780 6.22368 6.44269 6.59987 6.92748 6.96183 7.04554 7.12735 7.55587 7.59322 8.07038 8.37957 8.78790 9.56828 10.96305 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.004882 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.128967 B = 5734.315155 C = 6045.932326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.593 4.593 8 H 0.050 0.950 9 C 0.034 3.966 10 C -0.025 4.025 11 C -0.124 4.124 12 C -0.120 4.120 13 C -0.143 4.143 14 C -0.083 4.083 15 C -0.045 4.045 16 H 0.091 0.909 17 C -0.125 4.125 18 C -0.065 4.065 19 S -0.312 6.312 20 C -0.054 4.054 21 C -0.115 4.115 22 H 0.269 0.731 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 -13.149 3.419 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.631 4.631 8 H 0.068 0.932 9 C -0.003 4.003 10 C -0.026 4.026 11 C -0.142 4.142 12 C -0.138 4.138 13 C -0.161 4.161 14 C -0.085 4.085 15 C -0.066 4.066 16 H 0.110 0.890 17 C -0.163 4.163 18 C -0.213 4.213 19 S -0.085 6.085 20 C -0.201 4.201 21 C -0.133 4.133 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.685 -12.354 4.328 16.283 hybrid contribution 0.395 -0.837 -0.939 1.318 sum 10.080 -13.191 3.390 16.944 Atomic orbital electron populations 1.70793 1.06862 1.30618 1.46332 1.25880 0.96494 1.02650 0.93642 0.83529 0.74897 0.75200 0.76627 1.20658 1.21369 1.21369 1.21877 0.94294 0.90808 1.56113 0.93155 1.18487 0.93252 0.91433 0.97090 1.20446 0.95798 0.94325 0.91988 1.21095 0.98282 0.96548 0.98270 1.21000 0.98169 0.97302 0.97289 1.20651 1.02059 1.01253 0.92136 1.19484 0.98543 0.97209 0.93215 1.20983 0.94980 0.93871 0.96737 0.89036 1.22087 0.94116 0.98929 1.01182 1.23933 0.97594 0.96941 1.02848 1.87768 1.17209 1.57103 1.46422 1.24498 1.00696 0.96545 0.98402 1.20945 0.97990 0.96023 0.98350 0.92064 0.96263 0.96241 0.86531 0.86924 0.87218 0.90355 0.90012 0.89330 0.88460 0.87566 0.88845 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.39 13.65 55.43 0.76 -26.63 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 25.01 29.90 -169.99 -5.08 19.93 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.59 -16.63 9.09 -34.44 -0.31 -16.94 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.03 0.86 4.42 -29.03 -0.13 0.73 16 10 C -0.03 -0.54 5.07 -104.63 -0.53 -1.07 16 11 C -0.12 -2.36 9.70 -39.58 -0.38 -2.74 16 12 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 13 C -0.14 -2.09 8.16 -39.59 -0.32 -2.41 16 14 C -0.08 -1.28 4.79 -104.63 -0.50 -1.78 16 15 C -0.05 -0.57 2.74 -90.66 -0.25 -0.82 16 16 H 0.09 1.19 7.88 -51.93 -0.41 0.78 16 17 C -0.12 -1.37 5.80 -26.40 -0.15 -1.52 16 18 C -0.07 -0.64 7.38 37.53 0.28 -0.36 16 19 S -0.31 -3.71 23.22 -107.50 -2.50 -6.21 16 20 C -0.05 -0.62 6.78 38.30 0.26 -0.36 16 21 C -0.11 -2.16 9.33 -39.58 -0.37 -2.53 16 22 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 23 H 0.02 0.50 7.95 -51.93 -0.41 0.09 16 24 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16 25 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 26 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 27 H 0.11 1.33 7.32 -52.49 -0.38 0.95 16 28 H 0.08 0.86 6.82 -51.93 -0.35 0.51 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.03 7.10 -51.93 -0.37 0.66 16 34 H 0.12 2.18 7.95 -52.48 -0.42 1.77 16 LS Contribution 293.48 15.07 4.42 4.42 Total: -1.00 -29.90 293.48 -10.10 -40.00 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.79 Total: 0.20 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -2.91 Total: -31.70 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.76 Total: -26.63 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.50 Total: -6.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.90 -10.10 -40.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.964 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds