Wall clock time and date at job start Mon Mar 30 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.38264 * 119.99636 * 269.72554 * 10 9 7 12 12 C 1.38212 * 119.99339 * 179.81329 * 11 10 9 13 13 C 1.38256 * 120.00437 * 0.39187 * 12 11 10 14 14 C 1.38209 * 119.99886 * 359.86230 * 13 12 11 15 15 C 1.50699 * 120.00022 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.60156 * 180.68212 * 15 14 13 17 17 C 1.52935 * 109.60474 * 60.35276 * 15 14 13 18 18 C 1.53708 * 112.49126 * 209.96852 * 17 15 14 19 19 S 1.83394 * 104.96747 * 2.82679 * 18 17 15 20 20 C 1.55157 * 109.60441 * 300.99802 * 15 14 13 21 21 C 1.38209 * 120.00185 * 90.00040 * 10 9 7 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.07994 * 120.00453 * 359.97438 * 11 10 9 26 26 H 1.08006 * 119.99897 * 180.23095 * 12 11 10 27 27 H 1.08002 * 119.99747 * 179.83196 * 13 12 11 28 28 H 1.08998 * 108.88643 * 330.76359 * 17 15 14 29 29 H 1.09000 * 108.88467 * 89.31848 * 17 15 14 30 30 H 1.08998 * 110.34195 * 121.69755 * 18 17 15 31 31 H 1.09005 * 110.34354 * 243.95525 * 18 17 15 32 32 H 1.09003 * 111.13176 * 279.28467 * 20 15 14 33 33 H 1.09003 * 111.12419 * 43.45739 * 20 15 14 34 34 H 1.08005 * 119.99841 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.6762 -4.1742 -1.1950 12 6 3.5773 -5.2222 -1.1938 13 6 4.0268 -5.7461 0.0041 14 6 3.5771 -5.2201 1.2004 15 6 4.0665 -5.7916 2.5061 16 1 3.5977 -5.2621 3.3356 17 6 5.5859 -5.6414 2.5946 18 6 6.2395 -6.7560 3.4271 19 16 4.8586 -7.8674 3.8976 20 6 3.7075 -7.2992 2.5817 21 6 2.6786 -4.1693 1.1993 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.3223 -3.7674 -2.1307 26 1 3.9285 -5.6335 -2.1287 27 1 4.7288 -6.5668 0.0049 28 1 6.0018 -5.6632 1.5873 29 1 5.8193 -4.6796 3.0513 30 1 6.9730 -7.2958 2.8282 31 1 6.7096 -6.3381 4.3173 32 1 2.6695 -7.4414 2.8824 33 1 3.9127 -7.7997 1.6354 34 1 2.3272 -3.7581 2.1342 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:29 Heat of formation + Delta-G solvation = -18.521031 kcal Electronic energy + Delta-G solvation = -15300.281186 eV Core-core repulsion = 12901.113733 eV Total energy + Delta-G solvation = -2399.167454 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64397 -37.47325 -35.64372 -32.85349 -32.12287 -29.93052 -28.49759 -26.02527 -25.28953 -23.14172 -22.75653 -20.42959 -18.95419 -17.79053 -17.36415 -16.80720 -16.01545 -15.72633 -15.60636 -15.18000 -14.86752 -14.65145 -14.09402 -13.78917 -13.53141 -13.34776 -13.07841 -12.98111 -12.86124 -12.52396 -12.44811 -11.98130 -11.94200 -11.68527 -11.49573 -11.06722 -10.88107 -10.60771 -9.67877 -9.42256 -8.75213 -8.69886 -6.44906 0.43797 0.56323 0.87581 1.36601 1.50454 1.58451 1.78483 2.52774 2.88373 3.10567 3.53561 3.56688 3.95767 4.02738 4.08513 4.12876 4.19377 4.26950 4.30193 4.56312 4.60561 4.64466 4.73780 4.81774 4.94352 4.97914 5.05362 5.10571 5.20620 5.26256 5.58793 5.66269 5.87682 5.95497 6.11336 6.16017 6.51040 7.35688 8.66649 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.004882 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.128967 B = 5734.315155 C = 6045.932326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.035 4.035 3 Si 1.118 2.882 4 H -0.281 1.281 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.603 4.603 8 H 0.046 0.954 9 C 0.040 3.960 10 C -0.061 4.061 11 C -0.142 4.142 12 C -0.109 4.109 13 C -0.127 4.127 14 C -0.069 4.069 15 C -0.044 4.044 16 H 0.081 0.919 17 C -0.122 4.122 18 C -0.052 4.052 19 S -0.344 6.344 20 C -0.046 4.046 21 C -0.132 4.132 22 H 0.255 0.745 23 H -0.004 1.004 24 H -0.002 1.002 25 H 0.108 0.892 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.935 -14.502 3.266 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.232 4.232 3 Si 0.938 3.062 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.641 4.641 8 H 0.064 0.936 9 C 0.003 3.997 10 C -0.061 4.061 11 C -0.160 4.160 12 C -0.126 4.126 13 C -0.145 4.145 14 C -0.070 4.070 15 C -0.064 4.064 16 H 0.100 0.900 17 C -0.161 4.161 18 C -0.200 4.200 19 S -0.117 6.117 20 C -0.193 4.193 21 C -0.150 4.150 22 H 0.065 0.935 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.126 0.874 26 H 0.167 0.833 27 H 0.168 0.832 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.652 -13.737 4.178 19.137 hybrid contribution -0.500 -0.529 -0.868 1.133 sum 12.152 -14.266 3.310 19.030 Atomic orbital electron populations 1.70921 1.07895 1.29855 1.48508 1.27454 0.96549 1.06659 0.92557 0.82938 0.74167 0.71017 0.78081 1.20597 1.19430 1.19354 1.22207 0.94239 0.92278 1.55389 0.93608 1.18279 0.93701 0.92925 0.94829 1.20174 0.97053 0.94706 0.94193 1.21131 0.99787 0.98157 0.96963 1.21352 0.96295 0.95513 0.99488 1.21098 1.01256 1.01171 0.90974 1.19689 0.96675 0.95449 0.95224 1.20992 0.96293 0.94449 0.94697 0.90043 1.22049 0.92570 0.99498 1.01939 1.23992 0.96719 0.95865 1.03417 1.87952 1.18663 1.57941 1.47127 1.24442 1.00661 0.95397 0.98830 1.20914 0.99533 0.97674 0.96907 0.93512 0.98551 0.98396 0.87356 0.83298 0.83166 0.89584 0.90036 0.87369 0.87311 0.87688 0.87567 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.32 13.65 21.45 0.29 -58.03 16 2 C -0.03 -2.03 5.46 84.65 0.46 -1.56 16 3 Si 1.12 50.45 29.90 68.60 2.05 52.50 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.60 -35.07 9.09 25.60 0.23 -34.84 16 8 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 9 C 0.04 2.13 4.42 29.10 0.13 2.26 16 10 C -0.06 -2.70 5.07 -19.87 -0.10 -2.80 16 11 C -0.14 -5.41 9.70 22.27 0.22 -5.20 16 12 C -0.11 -3.11 10.05 22.27 0.22 -2.89 16 13 C -0.13 -3.22 8.16 22.27 0.18 -3.04 16 14 C -0.07 -1.98 4.79 -19.87 -0.10 -2.08 16 15 C -0.04 -1.01 2.74 -10.82 -0.03 -1.04 16 16 H 0.08 2.05 7.88 -2.39 -0.02 2.03 16 17 C -0.12 -2.27 5.80 30.81 0.18 -2.09 16 18 C -0.05 -0.83 7.38 72.22 0.53 -0.30 16 19 S -0.34 -7.31 23.22 -56.49 -1.31 -8.62 16 20 C -0.05 -0.93 6.78 72.72 0.49 -0.43 16 21 C -0.13 -5.05 9.33 22.27 0.21 -4.85 16 22 H 0.26 16.15 7.22 -92.71 -0.67 15.48 16 23 H 0.00 -0.21 7.95 -2.39 -0.02 -0.23 16 24 H 0.00 -0.12 7.95 -2.38 -0.02 -0.14 16 25 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.15 2.70 7.32 -2.91 -0.02 2.68 16 28 H 0.09 1.50 6.82 -2.39 -0.02 1.48 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.51 8.14 -2.38 -0.02 1.50 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 1.90 7.10 -2.39 -0.02 1.88 16 34 H 0.10 4.11 7.95 -2.91 -0.02 4.08 16 Total: -1.00 -67.11 293.48 4.83 -62.28 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.17 Total: 10.73 kcal Atomic # 6 Polarization: -61.48 SS G_CDS: 2.63 Total: -58.85 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.29 Total: -58.03 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Atomic # 16 Polarization: -7.31 SS G_CDS: -1.31 Total: -8.62 kcal Total: -67.11 4.83 -62.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.756 kcal (2) G-P(sol) polarization free energy of solvation -67.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds