Wall clock time and date at job start Mon Mar 30 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47130 * 269.99980 * 3 2 1 5 5 H 1.48499 * 109.46780 * 29.99818 * 3 2 1 6 6 H 1.48500 * 109.47009 * 149.99894 * 3 2 1 7 7 C 1.37877 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99675 * 359.97438 * 7 2 1 9 9 C 1.50690 * 120.00164 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47286 * 179.97438 * 9 7 2 11 11 C 1.38255 * 120.00225 * 89.99928 * 10 9 7 12 12 C 1.38208 * 120.00357 * 179.70539 * 11 10 9 13 13 C 1.38262 * 119.99554 * 359.97438 * 12 11 10 14 14 C 1.38205 * 120.00475 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00210 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.60487 * 178.88224 * 15 14 13 17 17 C 1.53855 * 109.61219 * 299.04895 * 15 14 13 18 18 C 1.55140 * 106.90100 * 167.17587 * 17 15 14 19 19 S 1.83467 * 102.20029 * 317.88107 * 18 17 15 20 20 C 1.54282 * 109.60678 * 58.54911 * 15 14 13 21 21 C 1.38220 * 120.00039 * 269.72879 * 10 9 7 22 22 H 0.97005 * 119.99840 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47121 * 60.00130 * 9 7 2 24 24 H 1.09001 * 109.47678 * 300.00235 * 9 7 2 25 25 H 1.08000 * 119.99329 * 359.72712 * 11 10 9 26 26 H 1.07992 * 120.00457 * 180.02562 * 12 11 10 27 27 H 1.08000 * 119.99741 * 180.02562 * 13 12 11 28 28 H 1.08998 * 109.97311 * 286.53454 * 17 15 14 29 29 H 1.08994 * 109.97432 * 47.80937 * 17 15 14 30 30 H 1.08994 * 110.85599 * 199.70451 * 18 17 15 31 31 H 1.08993 * 111.03424 * 76.13782 * 18 17 15 32 32 H 1.08998 * 110.39765 * 330.92112 * 20 15 14 33 33 H 1.09003 * 110.39633 * 93.21617 * 20 15 14 34 34 H 1.08002 * 119.99604 * 0.27433 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0139 -2.6148 -0.0001 11 6 4.2448 -3.2663 -1.1974 12 6 4.7114 -4.5673 -1.1976 13 6 4.9477 -5.2170 -0.0002 14 6 4.7169 -4.5658 1.1967 15 6 4.9739 -5.2742 2.5018 16 1 4.7560 -4.6021 3.3319 17 6 4.0744 -6.5185 2.5998 18 6 4.6088 -7.3694 3.7819 19 16 6.4250 -7.2669 3.5435 20 6 6.4502 -5.7175 2.5683 21 6 4.2492 -3.2648 1.1969 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6808 0.8906 24 1 3.8753 -0.6795 -0.8894 25 1 4.0609 -2.7584 -2.1326 26 1 4.8922 -5.0760 -2.1328 27 1 5.3127 -6.2334 -0.0003 28 1 3.0442 -6.2190 2.7925 29 1 4.1290 -7.0913 1.6741 30 1 4.2648 -8.4007 3.7044 31 1 4.3179 -6.9360 4.7387 32 1 6.8359 -5.9053 1.5663 33 1 7.0520 -4.9600 3.0705 34 1 4.0687 -2.7558 2.1322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:32 Heat of formation + Delta-G solvation = 2.529866 kcal Electronic energy + Delta-G solvation = -15294.473194 eV Core-core repulsion = 12896.218576 eV Total energy + Delta-G solvation = -2398.254618 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31548 -36.28489 -33.34721 -31.48288 -30.90879 -28.90011 -27.49746 -24.83032 -23.18069 -21.91887 -21.23434 -19.04510 -16.82107 -16.71944 -16.37449 -15.52716 -14.70492 -14.50197 -14.23011 -13.79788 -13.47648 -12.92910 -12.67137 -12.58919 -12.21124 -12.05200 -11.96196 -11.68732 -11.60660 -11.20584 -10.88782 -10.67755 -10.41783 -10.18117 -10.02767 -9.84738 -9.42777 -8.63125 -8.29685 -7.92593 -7.79787 -6.12223 -4.11752 1.73131 1.79221 1.97497 2.31429 3.24859 3.33004 3.35286 4.23677 4.37031 4.52068 4.53748 4.90200 4.98361 5.06652 5.17878 5.20254 5.36762 5.45658 5.50092 5.57852 5.62445 5.79308 5.89019 5.96528 6.02729 6.21576 6.43345 6.58722 6.88033 6.95964 6.96512 7.03779 7.51908 7.53212 7.66235 8.44252 8.92652 9.47932 11.00669 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.034638 B = 0.004865 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.162252 B = 5753.624785 C = 5978.901468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.026 4.026 11 C -0.121 4.121 12 C -0.120 4.120 13 C -0.140 4.140 14 C -0.083 4.083 15 C -0.051 4.051 16 H 0.088 0.912 17 C -0.120 4.120 18 C -0.068 4.068 19 S -0.312 6.312 20 C -0.059 4.059 21 C -0.113 4.113 22 H 0.265 0.735 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.955 -11.659 4.175 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.024 4.024 10 C -0.026 4.026 11 C -0.139 4.139 12 C -0.138 4.138 13 C -0.158 4.158 14 C -0.084 4.084 15 C -0.070 4.070 16 H 0.107 0.893 17 C -0.159 4.159 18 C -0.216 4.216 19 S -0.086 6.086 20 C -0.207 4.207 21 C -0.131 4.131 22 H 0.074 0.926 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.691 -12.268 4.563 17.551 hybrid contribution -0.670 1.657 -0.422 1.837 sum 11.021 -10.611 4.141 15.850 Atomic orbital electron populations 1.69900 1.06269 1.27026 1.50572 1.24998 0.94733 0.99025 0.94433 0.86809 0.80391 0.83664 0.78685 1.20119 1.21199 1.18945 1.20912 0.88201 0.94661 1.51417 0.90850 1.18823 0.97523 0.88659 0.97374 1.20273 0.92351 0.97881 0.92096 1.21101 0.99849 0.94709 0.98270 1.21004 1.00296 0.95133 0.97333 1.20691 1.03634 0.99338 0.92110 1.19420 1.01393 0.94484 0.93151 1.20905 0.92042 0.97150 0.96948 0.89330 1.22668 1.00549 0.94788 0.97877 1.24258 0.91698 1.03885 1.01800 1.87493 1.12727 1.35824 1.72557 1.24176 0.99160 0.95122 1.02211 1.20936 1.00095 0.93768 0.98340 0.92555 0.95432 0.95799 0.86351 0.86854 0.87052 0.89263 0.89954 0.88063 0.89094 0.88502 0.88656 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.51 -14.35 9.65 -34.45 -0.33 -14.68 16 8 H 0.07 2.25 7.98 -52.49 -0.42 1.83 16 9 C 0.01 0.31 4.17 -29.04 -0.12 0.19 16 10 C -0.03 -0.53 5.07 -104.62 -0.53 -1.06 16 11 C -0.12 -2.22 9.70 -39.59 -0.38 -2.61 16 12 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 13 C -0.14 -2.02 8.22 -39.58 -0.33 -2.35 16 14 C -0.08 -1.25 4.80 -104.63 -0.50 -1.75 16 15 C -0.05 -0.62 2.77 -90.66 -0.25 -0.87 16 16 H 0.09 1.07 7.89 -51.93 -0.41 0.66 16 17 C -0.12 -1.31 5.73 -25.15 -0.14 -1.46 16 18 C -0.07 -0.67 7.38 38.29 0.28 -0.38 16 19 S -0.31 -3.66 23.26 -107.50 -2.50 -6.16 16 20 C -0.06 -0.67 6.74 37.83 0.26 -0.41 16 21 C -0.11 -2.05 9.33 -39.58 -0.37 -2.42 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 24 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 25 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.11 1.37 7.31 -52.49 -0.38 0.99 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.91 7.18 -51.93 -0.37 0.54 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.10 6.87 -51.93 -0.36 0.75 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.12 2.07 7.95 -52.49 -0.42 1.66 16 LS Contribution 291.35 15.07 4.39 4.39 Total: -1.00 -29.79 291.35 -9.75 -39.53 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.82 Total: 0.47 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -2.92 Total: -28.16 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.50 Total: -6.16 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.79 -9.75 -39.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.061 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds