Wall clock time and date at job start Mon Mar 30 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.47014 * 179.97438 * 9 7 2 11 11 C 1.38098 * 120.04206 * 265.00598 * 10 9 7 12 12 C 1.38284 * 120.07768 * 180.02562 * 11 10 9 13 13 C 1.38317 * 120.16134 * 359.97438 * 12 11 10 14 14 C 1.38057 * 120.08190 * 359.97438 * 13 12 11 15 15 C 1.38950 * 120.03534 * 84.72351 * 10 9 7 16 16 S 1.76204 * 120.08517 * 0.02562 * 15 10 9 17 17 C 1.81401 * 103.00266 * 179.97438 * 16 15 10 18 18 C 1.53777 * 113.61052 * 272.49393 * 17 16 15 19 19 C 1.53784 * 87.07976 * 220.01614 * 18 17 16 20 20 C 1.53773 * 113.61381 * 174.99862 * 17 16 15 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 23 23 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 24 24 H 1.07997 * 119.96047 * 359.97438 * 11 10 9 25 25 H 1.08003 * 119.91281 * 179.97438 * 12 11 10 26 26 H 1.08008 * 119.95994 * 179.97438 * 13 12 11 27 27 H 1.08005 * 120.03717 * 180.02562 * 14 13 12 28 28 H 1.08995 * 112.84822 * 43.79989 * 17 16 15 29 29 H 1.08995 * 113.62051 * 334.56686 * 18 17 16 30 30 H 1.09004 * 113.61286 * 105.47050 * 18 17 16 31 31 H 1.08994 * 113.61699 * 270.88524 * 19 18 17 32 32 H 1.09005 * 113.61029 * 139.98324 * 19 18 17 33 33 H 1.09004 * 113.61498 * 254.52856 * 20 17 16 34 34 H 1.09004 * 113.61779 * 25.34219 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6447 0.0005 11 6 2.6005 -4.2378 -1.1904 12 6 3.4986 -5.2893 -1.1912 13 6 4.0298 -5.7505 -0.0003 14 6 3.6652 -5.1617 1.1941 15 6 2.7664 -4.1014 1.1984 16 16 2.3022 -3.3433 2.7198 17 6 3.2519 -4.2803 3.9490 18 6 2.5328 -5.5437 4.4505 19 6 3.0633 -5.1944 5.8510 20 6 3.1182 -3.7318 5.3793 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 0.8902 23 1 0.6248 -2.5571 -0.8897 24 1 2.1874 -3.8806 -2.1221 25 1 3.7860 -5.7515 -2.1241 26 1 4.7307 -6.5722 -0.0046 27 1 4.0807 -5.5221 2.1235 28 1 4.2832 -4.4556 3.6432 29 1 1.4472 -5.4898 4.3688 30 1 2.9432 -6.4691 4.0463 31 1 4.0431 -5.6210 6.0657 32 1 2.3404 -5.3695 6.6479 33 1 4.0012 -3.1943 5.7252 34 1 2.1933 -3.1811 5.5512 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022038.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:23 Heat of formation + Delta-G solvation = 15.876627 kcal Electronic energy + Delta-G solvation = -15406.906345 eV Core-core repulsion = 13009.230485 eV Total energy + Delta-G solvation = -2397.675859 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96186 -39.28427 -35.47304 -33.07270 -31.91016 -28.91761 -26.76882 -26.59138 -25.22548 -23.54902 -22.12266 -20.46810 -18.54843 -18.22780 -17.50679 -16.63956 -16.36367 -16.02400 -15.85449 -14.67214 -14.56855 -14.32935 -14.10456 -13.61453 -13.43292 -13.34668 -13.27458 -12.95556 -12.64078 -12.47720 -12.20373 -11.67964 -11.59464 -11.50453 -11.46945 -11.32042 -10.68932 -10.50952 -10.43249 -9.56937 -8.25958 -8.08904 -6.28436 0.42487 0.58876 0.83804 1.36889 1.40316 1.48041 1.77035 2.40074 2.92499 3.13504 3.54991 3.62068 3.87391 3.89231 4.07195 4.16807 4.30354 4.56791 4.59566 4.70755 4.77508 4.81734 4.93762 4.99250 5.06890 5.13936 5.15148 5.24854 5.37520 5.47400 5.49292 5.63445 5.75357 5.94192 6.11135 6.22387 6.79852 7.37658 8.91993 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.008169 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.412014 B = 3426.781488 C = 4542.044727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.509 4.509 8 H 0.046 0.954 9 C 0.061 3.939 10 C -0.063 4.063 11 C -0.127 4.127 12 C -0.122 4.122 13 C -0.118 4.118 14 C -0.135 4.135 15 C -0.098 4.098 16 S -0.146 6.146 17 C -0.116 4.116 18 C -0.126 4.126 19 C -0.117 4.117 20 C -0.114 4.114 21 H 0.264 0.736 22 H 0.009 0.991 23 H -0.001 1.001 24 H 0.117 0.883 25 H 0.151 0.849 26 H 0.159 0.841 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -13.003 8.018 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.023 3.977 10 C -0.068 4.068 11 C -0.147 4.147 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.159 4.159 15 C -0.210 4.210 16 S 0.102 5.898 17 C -0.245 4.245 18 C -0.165 4.165 19 C -0.156 4.156 20 C -0.153 4.153 21 H 0.073 0.927 22 H 0.027 0.973 23 H 0.018 0.982 24 H 0.135 0.865 25 H 0.169 0.831 26 H 0.176 0.824 27 H 0.158 0.842 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.231 -11.916 8.327 16.706 hybrid contribution 0.632 0.364 -0.701 1.012 sum 8.864 -11.552 7.626 16.437 Atomic orbital electron populations 1.70073 1.07557 1.27761 1.51689 1.25822 0.95682 1.02741 0.94795 0.85598 0.78453 0.78577 0.79075 1.19242 1.20404 1.19503 1.21083 0.92454 0.90884 1.50306 0.93527 1.18040 0.92847 0.91165 0.95620 1.20192 0.97872 0.96093 0.92613 1.21152 0.99486 0.97377 0.96693 1.21422 0.96822 0.96319 0.99630 1.21312 1.00453 1.00665 0.91293 1.21374 0.98320 0.96065 1.00124 1.21715 1.02453 1.00562 0.96310 1.86400 1.58354 1.47547 0.97531 1.25311 1.02172 1.00810 0.96178 1.23193 1.00254 0.95992 0.97104 1.22772 1.02871 0.93967 0.96003 1.22773 1.03039 0.98502 0.91003 0.92714 0.97273 0.98241 0.86508 0.83084 0.82383 0.84201 0.86862 0.90363 0.89844 0.87860 0.89596 0.89537 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 46.17 29.54 68.60 2.03 48.20 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.51 -30.35 9.07 25.60 0.23 -30.12 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.06 3.43 4.56 29.10 0.13 3.56 16 10 C -0.06 -2.95 5.09 -19.72 -0.10 -3.05 16 11 C -0.13 -5.12 9.67 22.25 0.22 -4.90 16 12 C -0.12 -3.74 10.04 22.30 0.22 -3.52 16 13 C -0.12 -3.30 10.04 22.25 0.22 -3.08 16 14 C -0.13 -4.37 9.32 22.41 0.21 -4.17 16 15 C -0.10 -4.08 6.11 22.62 0.14 -3.94 16 16 S -0.15 -5.98 20.01 -56.49 -1.13 -7.11 16 17 C -0.12 -3.16 3.01 31.12 0.09 -3.06 16 18 C -0.13 -2.76 7.56 31.12 0.24 -2.53 16 19 C -0.12 -1.96 8.08 31.12 0.25 -1.71 16 20 C -0.11 -2.58 7.67 31.12 0.24 -2.35 16 21 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 22 H 0.01 0.56 7.03 -2.39 -0.02 0.54 16 23 H 0.00 -0.04 8.05 -2.39 -0.02 -0.06 16 24 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 25 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 26 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.14 3.68 5.64 -2.91 -0.02 3.66 16 28 H 0.11 2.83 6.87 -2.39 -0.02 2.81 16 29 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 30 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.95 8.10 -2.38 -0.02 1.93 16 Total: -1.00 -70.22 296.43 4.81 -65.41 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.07 Total: 9.28 kcal Atomic # 6 Polarization: -60.52 SS G_CDS: 2.56 Total: -57.96 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.28 Total: -57.81 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 16 Polarization: -5.98 SS G_CDS: -1.13 Total: -7.11 kcal Total: -70.22 4.81 -65.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022038.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.283 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds