Wall clock time and date at job start Mon Mar 30 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99680 * 2 1 4 4 H 1.48501 * 109.47149 * 239.99881 * 3 2 1 5 5 H 1.48495 * 109.47430 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46899 * 120.00295 * 3 2 1 7 7 C 1.37878 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46757 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46757 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.91847 * 89.99954 * 11 10 9 13 13 C 1.38085 * 120.07833 * 180.02562 * 12 11 10 14 14 C 1.38969 * 119.92178 * 359.97438 * 13 12 11 15 15 S 1.76203 * 120.08313 * 180.02562 * 14 13 12 16 16 C 1.81396 * 103.00089 * 180.02562 * 15 14 13 17 17 C 1.53000 * 117.49795 * 243.74623 * 16 15 14 18 18 C 1.53001 * 117.49648 * 175.08525 * 16 15 14 19 19 C 1.38978 * 119.83970 * 359.95572 * 14 13 12 20 20 C 1.38087 * 119.91513 * 0.08597 * 19 14 13 21 21 H 0.97001 * 119.99996 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47096 * 60.00042 * 9 7 2 23 23 H 1.09000 * 109.46925 * 299.99965 * 9 7 2 24 24 H 1.08996 * 109.47023 * 60.00206 * 10 9 7 25 25 H 1.09000 * 109.47193 * 299.99579 * 10 9 7 26 26 H 1.08004 * 119.96339 * 359.97438 * 12 11 10 27 27 H 1.08003 * 120.03839 * 179.70078 * 13 12 11 28 28 H 1.08995 * 115.55199 * 29.41253 * 16 15 14 29 29 H 1.09005 * 117.49688 * 359.97438 * 17 16 15 30 30 H 1.08999 * 117.50561 * 145.02105 * 17 16 15 31 31 H 1.08998 * 117.49641 * 214.97263 * 18 16 15 32 32 H 1.08994 * 117.50293 * 359.97438 * 18 16 15 33 33 H 1.07994 * 120.04022 * 180.02562 * 19 14 13 34 34 H 1.07998 * 119.95549 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 0.0001 12 6 1.1466 -5.5648 -1.1983 13 6 0.4557 -6.7604 -1.2016 14 6 0.1078 -7.3633 0.0012 15 16 -0.7732 -8.8893 0.0020 16 6 -0.9773 -9.2417 1.7696 17 6 -0.2951 -10.4942 2.3236 18 6 -1.8162 -10.4620 2.1544 19 6 0.4578 -6.7605 1.2035 20 6 1.1479 -5.5645 1.1990 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 2.8720 -3.6042 0.8894 25 1 2.8720 -3.6043 -0.8905 26 1 1.4169 -5.0956 -2.1328 27 1 0.1821 -7.2242 -2.1378 28 1 -1.0311 -8.3687 2.4200 29 1 0.2759 -11.1066 1.6257 30 1 0.0995 -10.4454 3.3385 31 1 -2.4216 -10.3919 3.0581 32 1 -2.2458 -11.0528 1.3454 33 1 0.1895 -7.2264 2.1401 34 1 1.4199 -5.0952 2.1330 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260024710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:51 Heat of formation + Delta-G solvation = 18.401991 kcal Electronic energy + Delta-G solvation = -14639.096361 eV Core-core repulsion = 12241.530010 eV Total energy + Delta-G solvation = -2397.566351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19361 -37.71346 -35.98330 -34.00964 -31.97948 -30.71082 -27.04429 -24.60674 -23.82763 -23.34438 -22.82369 -21.73684 -18.62797 -18.41022 -17.70028 -16.53877 -16.47929 -16.15753 -15.66056 -14.77711 -14.63834 -14.55424 -14.12821 -14.08585 -13.80033 -13.15598 -12.82732 -12.71439 -12.49359 -12.34795 -12.22731 -12.06126 -11.68452 -11.62163 -11.49773 -11.23881 -11.13016 -10.56191 -10.28267 -9.94128 -8.27545 -8.17438 -6.32645 0.23939 0.41309 0.55104 1.40238 1.41119 1.43510 1.51491 2.40601 2.67029 2.75109 3.12586 3.70154 3.78327 3.91521 3.93497 4.04859 4.10163 4.40405 4.47586 4.66290 4.70756 4.74716 4.79587 4.85874 4.98378 5.08571 5.14828 5.17103 5.25742 5.36623 5.48690 5.54164 5.82668 5.85984 5.96306 6.21845 6.84187 7.36938 8.91243 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.049660 B = 0.003731 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.699536 B = 7502.310853 C = 7632.054780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.037 3.963 10 C -0.065 4.065 11 C -0.083 4.083 12 C -0.112 4.112 13 C -0.104 4.104 14 C -0.109 4.109 15 S -0.085 6.085 16 C -0.184 4.184 17 C -0.149 4.149 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.112 4.112 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.011 1.011 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.132 0.868 27 H 0.141 0.859 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -20.699 3.579 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.000 4.000 10 C -0.103 4.103 11 C -0.086 4.086 12 C -0.131 4.131 13 C -0.127 4.127 14 C -0.221 4.221 15 S 0.161 5.839 16 C -0.313 4.313 17 C -0.189 4.189 18 C -0.171 4.171 19 C -0.152 4.152 20 C -0.132 4.132 21 H 0.072 0.928 22 H 0.008 0.992 23 H 0.007 0.993 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.158 0.842 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.285 -21.330 2.661 21.533 hybrid contribution 0.556 2.107 0.918 2.364 sum -0.729 -19.223 3.579 19.567 Atomic orbital electron populations 1.70111 1.07923 1.27871 1.51510 1.26015 0.95748 1.03468 0.94623 0.85475 0.78237 0.77894 0.79295 1.19044 1.20924 1.19023 1.21690 0.93695 0.92163 1.50810 0.91782 1.18912 0.93998 0.92373 0.94723 1.20574 0.97269 0.90526 1.01891 1.20317 0.98355 0.96035 0.93850 1.21162 0.98648 0.95196 0.98111 1.20893 0.99176 0.95597 0.97046 1.21809 1.03942 0.99840 0.96532 1.84844 1.68759 1.21713 1.08611 1.24489 1.13829 0.97676 0.95256 1.23387 0.95539 0.96706 1.03293 1.23112 0.94443 0.95722 1.03862 1.21303 1.00240 0.96337 0.97283 1.21136 0.98716 0.95307 0.98015 0.92766 0.99249 0.99297 0.91626 0.91573 0.85042 0.84159 0.85715 0.87643 0.86449 0.85776 0.87699 0.84051 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.38 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.04 2.01 4.96 29.85 0.15 2.15 16 10 C -0.07 -2.77 5.28 29.85 0.16 -2.61 16 11 C -0.08 -3.14 5.14 -19.84 -0.10 -3.25 16 12 C -0.11 -3.84 9.69 22.25 0.22 -3.63 16 13 C -0.10 -3.19 9.79 22.41 0.22 -2.97 16 14 C -0.11 -3.24 6.11 22.62 0.14 -3.10 16 15 S -0.09 -2.05 22.14 -56.49 -1.25 -3.30 16 16 C -0.18 -3.39 5.49 30.59 0.17 -3.22 16 17 C -0.15 -2.02 10.30 30.62 0.32 -1.70 16 18 C -0.13 -1.70 10.30 30.62 0.32 -1.39 16 19 C -0.13 -3.84 9.33 22.41 0.21 -3.63 16 20 C -0.11 -3.83 9.69 22.25 0.22 -3.61 16 21 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 22 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 23 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 24 H 0.07 2.65 8.08 -2.39 -0.02 2.63 16 25 H 0.07 2.68 8.08 -2.39 -0.02 2.66 16 26 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 27 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 28 H 0.13 2.35 6.14 -2.39 -0.01 2.33 16 29 H 0.11 1.44 8.14 -2.38 -0.02 1.43 16 30 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.14 3.46 5.43 -2.91 -0.02 3.44 16 34 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -66.08 303.74 4.83 -61.25 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.07 Total: 10.77 kcal Atomic # 6 Polarization: -60.37 SS G_CDS: 2.70 Total: -57.68 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.28 Total: -57.52 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -1.25 Total: -3.30 kcal Total: -66.08 4.83 -61.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.654 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds