Wall clock time and date at job start Mon Mar 30 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47067 * 2 1 4 4 C 1.50702 * 109.46810 * 240.00205 * 2 1 3 5 5 H 1.08000 * 119.99606 * 240.00276 * 4 2 1 6 6 C 1.37879 * 120.00142 * 59.99755 * 4 2 1 7 7 N 1.31520 * 119.99791 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47583 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46955 * 120.00544 * 8 6 4 11 11 H 1.48493 * 109.47140 * 240.00097 * 8 6 4 12 12 C 1.50693 * 109.47122 * 120.00080 * 2 1 3 13 13 C 1.31842 * 122.55699 * 60.02068 * 12 2 1 14 14 S 1.75294 * 111.39431 * 179.97438 * 13 12 2 15 15 C 1.75949 * 92.19775 * 0.02562 * 14 13 12 16 16 C 1.39842 * 130.41831 * 180.02562 * 15 14 13 17 17 C 1.37389 * 120.41472 * 179.97438 * 16 15 14 18 18 C 1.39274 * 120.14529 * 359.97438 * 17 16 15 19 19 O 1.35989 * 119.83728 * 179.97438 * 18 17 16 20 20 C 1.37512 * 120.32291 * 0.02562 * 18 17 16 21 21 C 1.39687 * 109.66550 * 359.97438 * 15 14 13 22 22 H 1.08999 * 109.46983 * 300.00085 * 1 2 3 23 23 H 1.08997 * 109.47446 * 59.99391 * 1 2 3 24 24 H 1.09000 * 109.47520 * 180.02562 * 1 2 3 25 25 H 0.96999 * 119.99393 * 179.97438 * 7 6 4 26 26 H 1.07995 * 124.29994 * 0.02562 * 13 12 2 27 27 H 1.08006 * 119.79092 * 359.97438 * 16 15 14 28 28 H 1.08003 * 119.92422 * 180.02562 * 17 16 15 29 29 H 0.96700 * 114.00255 * 90.00465 * 19 18 17 30 30 H 1.08001 * 119.85166 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8161 12 6 2.0323 -0.7104 1.2304 13 6 1.7453 -1.9710 1.4887 14 16 2.4791 -2.4991 2.9905 15 6 3.2061 -0.9212 3.2690 16 6 4.0102 -0.4659 4.3186 17 6 4.4734 0.8275 4.3293 18 6 4.1450 1.6967 3.2918 19 8 4.6064 2.9758 3.3089 20 6 3.3555 1.2681 2.2506 21 6 2.8706 -0.0580 2.2232 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.7094 1.1619 -3.4844 26 1 1.1363 -2.5987 0.8551 27 1 4.2687 -1.1352 5.1258 28 1 5.0942 1.1707 5.1436 29 1 5.4615 3.0914 2.8723 30 1 3.1052 1.9486 1.4502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260026475.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:57 Heat of formation + Delta-G solvation = -28.648939 kcal Electronic energy + Delta-G solvation = -15317.810729 eV Core-core repulsion = 12782.371001 eV Total energy + Delta-G solvation = -2535.439727 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88000 -38.69335 -36.81229 -34.70037 -31.97633 -31.36897 -29.40502 -27.25481 -25.05876 -23.80282 -22.91899 -20.36174 -19.06790 -18.60961 -18.16032 -17.02535 -16.45432 -16.31605 -15.90928 -15.00887 -14.92502 -14.65084 -14.17927 -13.95791 -13.43936 -13.24012 -13.13708 -12.86470 -12.83429 -12.30385 -12.13805 -11.99919 -11.74203 -11.50379 -11.21157 -11.02271 -10.50346 -10.37911 -9.37298 -8.46189 -8.11342 -6.27051 -0.19699 0.14985 0.69852 1.09141 1.38208 1.39591 1.46441 1.53202 2.40799 2.62394 3.14629 3.24442 3.77387 3.86603 4.20586 4.33737 4.50779 4.68520 4.73469 4.86328 5.02914 5.04502 5.13434 5.16575 5.28512 5.42969 5.52118 5.59408 5.73955 5.97279 6.00944 6.30018 6.80741 6.85043 7.40839 8.92065 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.007414 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.882204 B = 3775.662971 C = 4421.522764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.092 3.908 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.051 0.949 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.280 1.280 12 C -0.069 4.069 13 C -0.205 4.205 14 S 0.092 5.908 15 C -0.163 4.163 16 C -0.066 4.066 17 C -0.123 4.123 18 C 0.105 3.895 19 O -0.504 6.504 20 C -0.126 4.126 21 C -0.075 4.075 22 H 0.020 0.980 23 H 0.062 0.938 24 H 0.034 0.966 25 H 0.263 0.737 26 H 0.162 0.838 27 H 0.163 0.837 28 H 0.171 0.829 29 H 0.410 0.590 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 -2.346 12.777 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.024 0.976 4 C -0.559 4.559 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.206 1.206 12 C -0.079 4.079 13 C -0.337 4.337 14 S 0.355 5.645 15 C -0.278 4.278 16 C -0.088 4.088 17 C -0.144 4.144 18 C 0.058 3.942 19 O -0.317 6.317 20 C -0.146 4.146 21 C -0.083 4.083 22 H 0.039 0.961 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.179 0.821 27 H 0.181 0.819 28 H 0.188 0.812 29 H 0.269 0.731 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.427 -3.563 13.676 15.525 hybrid contribution 0.312 1.115 -2.466 2.724 sum 6.739 -2.448 11.210 13.307 Atomic orbital electron populations 1.21645 0.97227 0.99382 0.99670 1.17451 0.92939 0.93859 0.88623 0.97611 1.21400 1.31205 1.12298 0.90988 0.93070 1.25710 0.95198 0.95679 1.01745 1.70019 1.37490 1.23955 1.24063 0.85548 0.78259 0.78691 0.79457 1.19336 1.20320 1.20602 1.20324 0.96680 0.94530 0.96382 1.24785 1.08283 0.99075 1.01591 1.83300 1.51476 1.09884 1.19802 1.22982 1.06082 0.98423 1.00282 1.20697 0.95453 0.96283 0.96362 1.21537 1.01331 0.92125 0.99379 1.18150 0.97362 0.84788 0.93875 1.84785 1.42913 1.23143 1.80907 1.21327 1.00012 0.94215 0.99067 1.19300 0.99649 0.94660 0.94706 0.96052 0.91885 0.94698 0.92817 0.82077 0.81902 0.81202 0.73110 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.80 71.98 0.63 -5.41 16 2 C 0.09 4.77 2.56 -12.29 -0.03 4.74 16 3 H 0.01 0.33 6.88 -2.39 -0.02 0.31 16 4 C -0.52 -28.82 8.30 25.60 0.21 -28.61 16 5 H 0.05 2.83 7.63 -2.91 -0.02 2.81 16 6 C 0.02 0.86 5.30 84.65 0.45 1.30 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.42 16 8 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C -0.07 -3.07 4.80 -18.82 -0.09 -3.16 16 13 C -0.20 -8.15 9.82 67.02 0.66 -7.50 16 14 S 0.09 2.88 23.23 -56.49 -1.31 1.57 16 15 C -0.16 -5.40 6.48 23.01 0.15 -5.25 16 16 C -0.07 -1.65 10.05 22.46 0.23 -1.42 16 17 C -0.12 -2.90 9.96 22.32 0.22 -2.68 16 18 C 0.11 3.09 6.67 22.35 0.15 3.24 16 19 O -0.50 -12.62 13.49 -93.43 -1.26 -13.88 16 20 C -0.13 -4.72 9.68 22.83 0.22 -4.50 16 21 C -0.07 -2.99 6.01 -20.35 -0.12 -3.12 16 22 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 24 H 0.03 1.63 7.70 -2.39 -0.02 1.61 16 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.16 6.34 7.88 -2.91 -0.02 6.32 16 27 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 28 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.41 6.11 9.06 -74.06 -0.67 5.43 16 30 H 0.11 4.61 7.14 -2.91 -0.02 4.59 16 Total: -1.00 -64.69 272.28 2.87 -61.82 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.50 Total: 9.70 kcal Atomic # 6 Polarization: -55.05 SS G_CDS: 2.68 Total: -52.37 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.24 Total: -52.42 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.26 Total: -13.88 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.31 Total: 1.57 kcal Total: -64.69 2.87 -61.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026475.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.172 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds