Wall clock time and date at job start Mon Mar 30 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46910 * 2 1 4 4 C 1.50700 * 109.47345 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00125 * 114.48701 * 4 2 1 6 6 C 1.37884 * 119.99588 * 294.48837 * 4 2 1 7 7 N 1.31509 * 119.99687 * 164.74458 * 6 4 2 8 8 Si 1.86798 * 120.00176 * 344.73719 * 6 4 2 9 9 H 1.48499 * 109.47421 * 270.00194 * 8 6 4 10 10 H 1.48492 * 109.47111 * 150.00068 * 8 6 4 11 11 H 1.48504 * 109.47054 * 30.00551 * 8 6 4 12 12 C 1.50704 * 109.46974 * 240.00180 * 2 1 3 13 13 C 1.31830 * 122.55842 * 300.02426 * 12 2 1 14 14 S 1.75294 * 111.39401 * 179.97438 * 13 12 2 15 15 C 1.75944 * 92.19967 * 359.97438 * 14 13 12 16 16 C 1.39844 * 130.42096 * 179.97438 * 15 14 13 17 17 C 1.37391 * 120.41200 * 179.97438 * 16 15 14 18 18 C 1.39275 * 120.14914 * 0.04868 * 17 16 15 19 19 O 1.35995 * 119.83933 * 179.97438 * 18 17 16 20 20 C 1.37514 * 120.31989 * 359.97438 * 18 17 16 21 21 C 1.39695 * 109.66272 * 359.75598 * 15 14 13 22 22 H 1.09006 * 109.47280 * 173.75548 * 1 2 3 23 23 H 1.09000 * 109.47115 * 293.75124 * 1 2 3 24 24 H 1.08995 * 109.47392 * 53.75705 * 1 2 3 25 25 H 0.96997 * 120.00093 * 354.89065 * 7 6 4 26 26 H 1.08002 * 124.30258 * 359.97162 * 13 12 2 27 27 H 1.08004 * 119.78932 * 0.02562 * 16 15 14 28 28 H 1.08000 * 119.92274 * 180.02562 * 17 16 15 29 29 H 0.96702 * 113.99653 * 89.99416 * 19 18 17 30 30 H 1.07996 * 119.85020 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5779 -1.6375 1.1338 6 6 1.7955 -0.1769 2.4795 7 7 1.9573 -0.9191 3.5530 8 14 1.2449 1.6003 2.6470 9 1 2.4363 2.4780 2.7711 10 1 0.3963 1.7436 3.8570 11 1 0.4644 1.9919 1.4458 12 6 2.0323 -0.7104 -1.2305 13 6 1.7446 -1.9706 -1.4893 14 16 2.4773 -2.4983 -2.9918 15 6 3.2049 -0.9206 -3.2698 16 6 4.0087 -0.4651 -4.3196 17 6 4.4716 0.8284 -4.3303 18 6 4.1437 1.6974 -3.2924 19 8 4.6057 2.9763 -3.3092 20 6 3.3549 1.2684 -2.2509 21 6 2.8653 -0.0560 -2.2265 22 1 -0.3634 -1.0216 -0.1118 23 1 -0.3633 0.4139 0.9406 24 1 -0.3634 0.6075 -0.8288 25 1 2.1710 -1.8610 3.4637 26 1 1.1350 -2.5982 -0.8561 27 1 4.2665 -1.1341 -5.1273 28 1 5.0915 1.1721 -5.1452 29 1 4.0179 3.6011 -3.7555 30 1 3.1055 1.9485 -1.4499 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260026479.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:00 Heat of formation + Delta-G solvation = -9.609534 kcal Electronic energy + Delta-G solvation = -15389.305804 eV Core-core repulsion = 12854.691687 eV Total energy + Delta-G solvation = -2534.614117 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71512 -37.48898 -35.46455 -32.90462 -30.78099 -30.20654 -28.23005 -24.84786 -23.51513 -22.60674 -21.37180 -18.85598 -17.84172 -17.51271 -17.15376 -15.68098 -15.22799 -14.81148 -14.21722 -13.72569 -13.37266 -13.26923 -12.90694 -12.28334 -12.23230 -12.07231 -11.92284 -11.30990 -10.97303 -10.60661 -10.42488 -10.38888 -10.23777 -9.85753 -9.60472 -9.25065 -8.85466 -8.34175 -8.14343 -7.23747 -6.45456 -4.11537 1.03441 1.29863 1.92740 2.44118 2.78791 3.38791 3.40881 3.55425 3.80976 4.26564 4.47158 4.90309 5.00428 5.23404 5.33529 5.49399 5.69650 5.95228 6.02877 6.21398 6.22585 6.33455 6.48567 6.50913 6.64204 6.74635 6.85236 6.98480 7.11669 7.46244 7.71713 8.02115 8.34979 8.85687 9.56242 10.90312 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.008442 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.631405 B = 3316.125890 C = 4215.716079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.065 3.935 3 H 0.031 0.969 4 C -0.592 4.592 5 H 0.059 0.941 6 C 0.033 3.967 7 N -0.905 5.905 8 Si 1.039 2.961 9 H -0.285 1.285 10 H -0.286 1.286 11 H -0.269 1.269 12 C -0.036 4.036 13 C -0.189 4.189 14 S 0.039 5.961 15 C -0.145 4.145 16 C -0.072 4.072 17 C -0.136 4.136 18 C 0.094 3.906 19 O -0.497 6.497 20 C -0.097 4.097 21 C -0.046 4.046 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.024 0.976 25 H 0.269 0.731 26 H 0.166 0.834 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.386 0.614 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 3.414 -15.643 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.049 0.951 4 C -0.630 4.630 5 H 0.077 0.923 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.867 3.133 9 H -0.212 1.212 10 H -0.212 1.212 11 H -0.195 1.195 12 C -0.046 4.046 13 C -0.322 4.322 14 S 0.302 5.698 15 C -0.260 4.260 16 C -0.095 4.095 17 C -0.157 4.157 18 C 0.047 3.953 19 O -0.307 6.307 20 C -0.117 4.117 21 C -0.055 4.055 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.183 0.817 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.241 0.759 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.608 2.890 -14.944 15.233 hybrid contribution 0.095 0.165 -0.495 0.530 sum 0.702 3.055 -15.439 15.754 Atomic orbital electron populations 1.22199 0.97843 0.99988 0.99506 1.18001 0.92168 0.95431 0.90088 0.95102 1.21975 1.40036 1.10625 0.90337 0.92300 1.25750 0.94201 1.05286 0.91918 1.70800 1.44041 1.08301 1.30748 0.84175 0.77305 0.75758 0.76084 1.21206 1.21152 1.19487 1.20135 0.95293 0.93622 0.95557 1.24668 1.08319 0.99382 0.99821 1.83719 1.52658 1.10971 1.22433 1.22664 1.05099 0.98236 1.00022 1.20234 0.97038 0.95469 0.96771 1.21143 1.01908 0.93803 0.98815 1.18047 0.97185 0.85379 0.94653 1.84878 1.48901 1.16142 1.80758 1.21296 0.96375 0.95226 0.98767 1.19265 0.98619 0.93660 0.93922 0.93658 0.92841 0.95674 0.92136 0.81669 0.85593 0.85140 0.75927 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.39 37.16 0.31 -2.62 16 2 C 0.06 1.51 2.11 -92.92 -0.20 1.31 16 3 H 0.03 0.72 5.51 -51.93 -0.29 0.43 16 4 C -0.59 -16.26 8.60 -34.44 -0.30 -16.55 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.03 0.95 5.33 -17.82 -0.09 0.85 16 7 N -0.91 -27.48 13.69 55.43 0.76 -26.72 16 8 Si 1.04 24.58 26.17 -169.99 -4.45 20.14 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -5.75 5.54 56.52 0.31 -5.44 16 12 C -0.04 -0.76 4.81 -103.67 -0.50 -1.26 16 13 C -0.19 -3.71 9.69 28.84 0.28 -3.43 16 14 S 0.04 0.64 23.23 -107.50 -2.50 -1.86 16 15 C -0.15 -2.49 6.48 -38.44 -0.25 -2.74 16 16 C -0.07 -1.02 10.05 -39.29 -0.40 -1.42 16 17 C -0.14 -1.81 9.96 -39.50 -0.39 -2.20 16 18 C 0.09 1.40 6.67 -39.46 -0.26 1.14 16 19 O -0.50 -6.40 13.49 -19.72 -0.27 -6.66 16 20 C -0.10 -1.69 9.68 -38.72 -0.37 -2.07 16 21 C -0.05 -0.88 6.01 -105.37 -0.63 -1.51 16 22 H 0.04 0.93 7.48 -51.93 -0.39 0.54 16 23 H 0.05 1.16 5.06 -51.93 -0.26 0.90 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 26 H 0.17 3.21 7.83 -52.49 -0.41 2.80 16 27 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.39 2.91 9.06 45.56 0.41 3.32 16 30 H 0.14 2.35 7.14 -52.49 -0.37 1.98 16 LS Contribution 267.03 15.07 4.02 4.02 Total: -1.00 -31.07 267.03 -7.46 -38.53 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -2.23 Total: 3.07 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -2.80 Total: -30.51 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.76 Total: -26.72 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.27 Total: -6.66 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.45 Total: 20.14 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.50 Total: -1.86 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.07 -7.46 -38.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026479.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.923 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds