Wall clock time and date at job start Mon Mar 30 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00163 * 2 1 4 4 H 1.48498 * 109.47460 * 265.62815 * 3 2 1 5 5 H 1.48499 * 109.46993 * 25.62528 * 3 2 1 6 6 H 1.48501 * 109.47318 * 145.62244 * 3 2 1 7 7 C 1.37883 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99526 * 353.37545 * 7 2 1 9 9 C 1.50699 * 119.99883 * 173.37295 * 7 2 1 10 10 H 1.09000 * 109.47249 * 354.75555 * 9 7 2 11 11 C 1.52995 * 109.47082 * 234.75658 * 9 7 2 12 12 N 1.46899 * 109.47403 * 64.84700 * 11 9 7 13 13 C 1.50699 * 109.47016 * 114.75498 * 9 7 2 14 14 C 1.32096 * 124.29987 * 240.00012 * 13 9 7 15 15 C 1.44895 * 114.83021 * 180.22905 * 14 13 9 16 16 C 1.41410 * 130.45716 * 179.75271 * 15 14 13 17 17 C 1.36121 * 119.28443 * 179.97438 * 16 15 14 18 18 N 1.32308 * 121.45790 * 0.02726 * 17 16 15 19 19 C 1.31486 * 122.06876 * 359.48791 * 18 17 16 20 20 C 1.39537 * 120.60876 * 0.74028 * 19 18 17 21 21 S 1.75352 * 124.29664 * 59.97783 * 13 9 7 22 22 H 0.97002 * 119.99899 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47363 * 184.84809 * 11 9 7 24 24 H 1.08997 * 109.47498 * 304.84700 * 11 9 7 25 25 H 1.00897 * 111.00831 * 176.99451 * 12 11 9 26 26 H 1.00902 * 111.00127 * 300.94925 * 12 11 9 27 27 H 1.07997 * 122.58057 * 359.95552 * 14 13 9 28 28 H 1.08001 * 120.35789 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.27235 * 180.02562 * 17 16 15 30 30 H 1.07996 * 119.69156 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5892 1.9931 -1.3960 5 1 1.4035 2.6775 0.6055 6 1 3.4974 1.4686 0.7905 7 6 2.0046 -1.1941 -0.0005 8 1 1.4699 -2.1263 0.1070 9 6 3.5040 -1.1984 -0.1512 10 1 3.8532 -0.1832 -0.3394 11 6 3.8961 -2.0983 -1.3247 12 7 3.3784 -1.5263 -2.5748 13 6 4.1344 -1.7200 1.1144 14 6 4.9781 -1.0330 1.8636 15 6 5.4637 -1.7359 3.0339 16 6 6.3651 -1.3246 4.0429 17 6 6.6668 -2.1821 5.0561 18 7 6.1357 -3.3923 5.1176 19 6 5.2847 -3.8280 4.2149 20 6 4.9186 -3.0220 3.1362 21 16 3.8409 -3.3156 1.7796 22 1 -0.4850 0.8401 -0.0004 23 1 4.9823 -2.1702 -1.3804 24 1 3.4734 -3.0922 -1.1776 25 1 3.6657 -2.0762 -3.3704 26 1 2.3741 -1.4350 -2.5421 27 1 5.2856 -0.0268 1.6201 28 1 6.8088 -0.3405 4.0104 29 1 7.3549 -1.8677 5.8268 30 1 4.8742 -4.8230 4.3028 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029385.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:53 Heat of formation + Delta-G solvation = 24.108869 kcal Electronic energy + Delta-G solvation = -15258.716929 eV Core-core repulsion = 12757.857703 eV Total energy + Delta-G solvation = -2500.859226 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15582 -38.24200 -36.05499 -34.29019 -32.44752 -32.20301 -29.48809 -26.33796 -25.06356 -24.30192 -22.12399 -21.28467 -19.36041 -18.59224 -17.36591 -17.10332 -16.53348 -16.38898 -15.67541 -15.35972 -15.28579 -14.72388 -14.68633 -14.34141 -14.04555 -13.51219 -13.16212 -12.86977 -12.77811 -12.51760 -11.91683 -11.86561 -11.62403 -11.21560 -10.81240 -10.78207 -10.65534 -9.73121 -9.44961 -8.75097 -8.33499 -6.38630 -0.30312 0.06626 0.55134 1.09723 1.34798 1.37795 1.41808 1.44249 2.32764 2.80391 3.01811 3.49193 3.59316 3.81832 3.94474 4.02733 4.33555 4.42673 4.47941 4.65676 4.70177 4.78097 4.85500 4.97326 5.10925 5.28259 5.39832 5.57929 5.65342 6.19724 6.38154 6.64939 6.84133 6.93287 7.28399 8.81056 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.007577 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.463770 B = 3694.729670 C = 4020.169123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.034 3.966 3 Si 0.929 3.071 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.251 1.251 7 C -0.502 4.502 8 H 0.042 0.958 9 C 0.067 3.933 10 H 0.059 0.941 11 C 0.085 3.915 12 N -0.850 5.850 13 C -0.097 4.097 14 C -0.181 4.181 15 C -0.040 4.040 16 C -0.139 4.139 17 C 0.077 3.923 18 N -0.497 5.497 19 C 0.152 3.848 20 C -0.232 4.232 21 S 0.116 5.884 22 H 0.267 0.733 23 H 0.067 0.933 24 H 0.016 0.984 25 H 0.344 0.656 26 H 0.345 0.655 27 H 0.147 0.853 28 H 0.162 0.838 29 H 0.191 0.809 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.708 -3.543 4.401 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.165 4.165 3 Si 0.755 3.245 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.175 1.175 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.046 3.954 10 H 0.077 0.923 11 C -0.047 4.047 12 N -0.380 5.380 13 C -0.216 4.216 14 C -0.210 4.210 15 C -0.056 4.056 16 C -0.160 4.160 17 C -0.073 4.073 18 N -0.206 5.206 19 C -0.017 4.017 20 C -0.349 4.349 21 S 0.380 5.620 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.034 0.966 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.180 0.820 29 H 0.208 0.792 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 12.364 -4.484 4.815 14.005 hybrid contribution -0.312 1.702 -0.446 1.787 sum 12.052 -2.781 4.369 13.118 Atomic orbital electron populations 1.70013 1.07965 1.28136 1.51070 1.25733 0.95189 1.02187 0.93435 0.85982 0.79320 0.79588 0.79632 1.18675 1.22154 1.17530 1.20856 0.89607 0.93389 1.50127 0.93962 1.18062 0.93982 0.96436 0.86894 0.92342 1.21669 0.98019 0.94696 0.90285 1.58617 1.18482 1.56929 1.04007 1.24987 0.97050 0.97009 1.02535 1.20886 1.02521 1.01902 0.95663 1.19716 0.97267 0.92849 0.95797 1.21958 0.97704 1.02693 0.93620 1.22657 0.98300 0.88671 0.97713 1.67772 1.09482 1.17040 1.26337 1.22529 0.92783 0.99250 0.87145 1.24107 1.06299 1.00630 1.03900 1.83968 1.46277 1.14484 1.17319 0.92390 0.91503 0.96626 0.84325 0.84120 0.83520 0.82049 0.79191 0.80480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.96 21.45 0.30 -54.63 16 2 C 0.03 1.87 5.47 84.66 0.46 2.34 16 3 Si 0.93 42.68 26.92 68.60 1.85 44.53 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.25 -10.78 6.84 99.48 0.68 -10.10 16 7 C -0.50 -26.09 7.79 25.60 0.20 -25.89 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.07 2.91 2.25 -12.29 -0.03 2.89 16 10 H 0.06 2.60 4.79 -2.39 -0.01 2.59 16 11 C 0.08 3.19 6.10 86.30 0.53 3.72 16 12 N -0.85 -30.62 9.60 -186.73 -1.79 -32.41 16 13 C -0.10 -3.91 5.00 24.72 0.12 -3.78 16 14 C -0.18 -6.66 10.17 23.01 0.23 -6.43 16 15 C -0.04 -1.33 6.10 -20.35 -0.12 -1.46 16 16 C -0.14 -3.59 10.13 22.56 0.23 -3.36 16 17 C 0.08 1.84 11.07 84.13 0.93 2.77 16 18 N -0.50 -13.88 10.34 -196.35 -2.03 -15.91 16 19 C 0.15 4.37 11.24 85.06 0.96 5.32 16 20 C -0.23 -7.71 6.52 23.03 0.15 -7.56 16 21 S 0.12 4.21 22.88 -56.49 -1.29 2.92 16 22 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 23 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.02 0.59 8.10 -2.39 -0.02 0.57 16 25 H 0.34 9.88 9.08 -89.70 -0.81 9.06 16 26 H 0.35 13.90 8.15 -89.69 -0.73 13.17 16 27 H 0.15 5.04 8.06 -2.91 -0.02 5.01 16 28 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.18 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -61.92 273.44 0.30 -61.62 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.39 Total: 25.31 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 3.66 Total: -31.43 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -3.52 Total: -102.95 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.85 Total: 44.53 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.29 Total: 2.92 kcal Total: -61.92 0.30 -61.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029385.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.725 kcal (2) G-P(sol) polarization free energy of solvation -61.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds