Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48505 * 109.46840 * 274.65966 * 3 2 1 5 5 H 1.48499 * 109.47127 * 34.65777 * 3 2 1 6 6 H 1.48500 * 109.47438 * 154.66056 * 3 2 1 7 7 C 1.39950 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99647 * 162.23545 * 7 2 1 9 9 C 1.41396 * 120.00297 * 342.23616 * 7 2 1 10 10 C 1.40738 * 120.23826 * 335.30771 * 9 7 2 11 11 C 1.37598 * 119.73916 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.25182 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49939 * 359.68182 * 12 11 10 14 14 C 1.50699 * 119.87572 * 180.30370 * 13 12 11 15 15 C 1.52997 * 109.47021 * 270.29579 * 14 13 12 16 16 H 1.09002 * 108.84985 * 305.70337 * 15 14 13 17 17 C 1.52946 * 108.88888 * 187.12517 * 15 14 13 18 18 C 1.54995 * 109.04285 * 208.99518 * 17 15 14 19 19 S 1.83993 * 100.82153 * 41.60588 * 18 17 15 20 20 C 1.53710 * 108.88815 * 64.27923 * 15 14 13 21 21 C 1.37641 * 120.24516 * 0.59818 * 13 12 11 22 22 H 0.97001 * 120.00096 * 0.02562 * 1 2 3 23 23 H 1.07992 * 120.13362 * 359.97438 * 10 9 7 24 24 H 1.08004 * 119.87500 * 180.02562 * 11 10 9 25 25 H 1.07997 * 119.74917 * 179.97438 * 12 11 10 26 26 H 1.08999 * 109.47152 * 30.29412 * 14 13 12 27 27 H 1.09006 * 109.46922 * 150.29778 * 14 13 12 28 28 H 1.08998 * 109.60215 * 329.03561 * 17 15 14 29 29 H 1.08993 * 109.60248 * 89.17453 * 17 15 14 30 30 H 1.08996 * 111.23380 * 283.70190 * 18 17 15 31 31 H 1.08996 * 111.14469 * 159.47903 * 18 17 15 32 32 H 1.08996 * 110.34030 * 242.49313 * 20 15 14 33 33 H 1.09003 * 110.33685 * 4.74381 * 20 15 14 34 34 H 1.08007 * 120.12280 * 179.69437 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0492 -1.2344 -0.2848 9 6 1.3515 -2.4072 0.3747 10 6 0.2228 -2.3630 1.2142 11 6 -0.4084 -3.5324 1.5714 12 6 0.0639 -4.7509 1.1079 13 6 1.1711 -4.8058 0.2758 14 6 1.6684 -6.1372 -0.2252 15 6 2.6917 -6.7034 0.7613 16 1 3.4743 -5.9618 0.9213 17 6 3.3177 -7.9616 0.1577 18 6 3.7434 -8.9143 1.3037 19 16 2.3011 -8.7592 2.4356 20 6 1.9902 -6.9833 2.1001 21 6 1.8217 -3.6492 -0.0898 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1465 -1.4152 1.5766 24 1 -1.2750 -3.5010 2.2151 25 1 -0.4374 -5.6637 1.3937 26 1 0.8299 -6.8278 -0.3152 27 1 2.1376 -6.0063 -1.2003 28 1 2.5906 -8.4606 -0.4829 29 1 4.1930 -7.6880 -0.4313 30 1 4.6589 -8.5694 1.7843 31 1 3.8526 -9.9375 0.9443 32 1 2.4210 -6.3675 2.8895 33 1 0.9200 -6.7957 2.0134 34 1 2.6872 -3.6947 -0.7343 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -5.813428 kcal Electronic energy + Delta-G solvation = -15433.017675 eV Core-core repulsion = 13034.401264 eV Total energy + Delta-G solvation = -2398.616411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.26890 -36.37502 -33.72919 -31.38919 -29.86574 -28.78964 -26.35695 -25.29297 -23.52456 -20.80057 -20.24806 -19.56687 -17.02216 -16.51495 -15.54629 -15.27471 -14.67558 -14.29401 -13.91850 -13.56170 -13.30810 -12.81467 -12.42815 -12.15382 -11.97312 -11.72472 -11.50071 -11.35730 -11.05946 -10.97617 -10.84760 -10.56111 -10.43812 -10.35701 -9.77098 -9.50857 -9.40318 -9.13998 -7.61433 -7.47224 -7.26888 -6.77105 -4.37279 1.99186 2.47629 2.77148 2.95517 3.05837 3.09948 3.20531 3.91927 4.55671 4.66689 4.80029 5.03989 5.21933 5.27112 5.49193 5.64327 5.69665 5.77376 5.88263 5.93994 6.09406 6.21636 6.29047 6.42006 6.47309 6.55716 6.92276 7.04756 7.23336 7.37553 7.59173 7.89163 8.03640 8.09111 8.27494 8.62755 8.88433 8.96718 10.17874 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.041431 B = 0.004893 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.653282 B = 5720.678537 C = 6035.694426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.110 3.890 10 C -0.165 4.165 11 C -0.105 4.105 12 C -0.236 4.236 13 C -0.066 4.066 14 C -0.063 4.063 15 C -0.088 4.088 16 H 0.080 0.920 17 C -0.121 4.121 18 C -0.065 4.065 19 S -0.327 6.327 20 C -0.051 4.051 21 C -0.218 4.218 22 H 0.280 0.720 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -9.680 0.780 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.108 3.892 10 C -0.184 4.184 11 C -0.124 4.124 12 C -0.255 4.255 13 C -0.066 4.066 14 C -0.101 4.101 15 C -0.108 4.108 16 H 0.099 0.901 17 C -0.160 4.160 18 C -0.213 4.213 19 S -0.101 6.101 20 C -0.199 4.199 21 C -0.238 4.238 22 H 0.091 0.909 23 H 0.134 0.866 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.071 -10.313 1.501 11.189 hybrid contribution 0.809 1.703 -0.720 2.019 sum 4.881 -8.610 0.781 9.928 Atomic orbital electron populations 1.69826 1.07591 1.29139 1.35431 1.25891 0.94686 1.01254 0.92244 0.86351 0.80790 0.80854 0.79036 1.19601 1.20043 1.18458 1.19556 0.98048 0.91314 1.40593 0.90577 1.17591 0.91124 0.91967 0.88506 1.21321 0.99380 0.96760 1.00930 1.20672 0.98512 0.93378 0.99815 1.20209 1.01415 0.95885 1.08028 1.19197 0.96148 0.93032 0.98205 1.20587 0.97185 0.95150 0.97189 1.21620 0.98220 0.97158 0.93832 0.90127 1.22463 1.01179 0.94762 0.97591 1.24260 0.97440 1.03030 0.96573 1.87711 1.41713 1.18048 1.62653 1.24210 1.05760 0.90614 0.99293 1.20804 1.03576 0.92389 1.07026 0.90929 0.86628 0.89561 0.89631 0.91879 0.91782 0.90393 0.90322 0.89453 0.88107 0.89467 0.87100 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.53 10.97 55.55 0.61 -19.92 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.55 29.59 -169.99 -5.03 13.51 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.47 -12.26 9.05 -37.74 -0.34 -12.60 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.11 2.90 5.57 -106.83 -0.60 2.31 16 10 C -0.16 -4.25 8.70 -38.87 -0.34 -4.59 16 11 C -0.11 -2.44 10.02 -39.66 -0.40 -2.84 16 12 C -0.24 -5.06 8.50 -39.29 -0.33 -5.39 16 13 C -0.07 -1.37 4.83 -104.70 -0.51 -1.88 16 14 C -0.06 -1.03 4.45 -27.88 -0.12 -1.16 16 15 C -0.09 -1.26 2.67 -90.28 -0.24 -1.51 16 16 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 17 C -0.12 -1.38 5.78 -25.71 -0.15 -1.53 16 18 C -0.06 -0.71 7.52 38.21 0.29 -0.42 16 19 S -0.33 -4.62 23.22 -107.50 -2.50 -7.12 16 20 C -0.05 -0.77 6.39 37.53 0.24 -0.53 16 21 C -0.22 -5.16 9.44 -38.88 -0.37 -5.53 16 22 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 23 H 0.12 3.10 6.18 -52.49 -0.32 2.77 16 24 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 25 H 0.09 1.65 6.80 -52.49 -0.36 1.29 16 26 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.08 0.87 7.83 -51.93 -0.41 0.47 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.11 1.79 5.19 -51.93 -0.27 1.52 16 34 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 288.34 15.07 4.35 4.35 Total: -1.00 -26.88 288.34 -10.23 -37.11 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.70 Total: 5.89 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: -2.95 Total: -33.83 kcal Atomic # 7 Polarization: -20.53 SS G_CDS: 0.61 Total: -19.92 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -2.50 Total: -7.12 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.88 -10.23 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.300 kcal (2) G-P(sol) polarization free energy of solvation -26.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds