Wall clock time and date at job start Mon Mar 30 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48505 * 109.46840 * 274.65966 * 3 2 1 5 5 H 1.48499 * 109.47127 * 34.65777 * 3 2 1 6 6 H 1.48500 * 109.47438 * 154.66056 * 3 2 1 7 7 C 1.39950 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99647 * 162.23545 * 7 2 1 9 9 C 1.41396 * 120.00297 * 342.23616 * 7 2 1 10 10 C 1.40738 * 120.23826 * 335.30771 * 9 7 2 11 11 C 1.37598 * 119.73916 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.25182 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49939 * 359.68182 * 12 11 10 14 14 C 1.50699 * 119.87572 * 180.30370 * 13 12 11 15 15 C 1.52997 * 109.47021 * 270.29579 * 14 13 12 16 16 H 1.09002 * 108.84985 * 305.70337 * 15 14 13 17 17 C 1.52946 * 108.88888 * 187.12517 * 15 14 13 18 18 C 1.54995 * 109.04285 * 208.99518 * 17 15 14 19 19 S 1.83993 * 100.82153 * 41.60588 * 18 17 15 20 20 C 1.53710 * 108.88815 * 64.27923 * 15 14 13 21 21 C 1.37641 * 120.24516 * 0.59818 * 13 12 11 22 22 H 0.97001 * 120.00096 * 0.02562 * 1 2 3 23 23 H 1.07992 * 120.13362 * 359.97438 * 10 9 7 24 24 H 1.08004 * 119.87500 * 180.02562 * 11 10 9 25 25 H 1.07997 * 119.74917 * 179.97438 * 12 11 10 26 26 H 1.08999 * 109.47152 * 30.29412 * 14 13 12 27 27 H 1.09006 * 109.46922 * 150.29778 * 14 13 12 28 28 H 1.08998 * 109.60215 * 329.03561 * 17 15 14 29 29 H 1.08993 * 109.60248 * 89.17453 * 17 15 14 30 30 H 1.08996 * 111.23380 * 283.70190 * 18 17 15 31 31 H 1.08996 * 111.14469 * 159.47903 * 18 17 15 32 32 H 1.08996 * 110.34030 * 242.49313 * 20 15 14 33 33 H 1.09003 * 110.33685 * 4.74381 * 20 15 14 34 34 H 1.08007 * 120.12280 * 179.69437 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0492 -1.2344 -0.2848 9 6 1.3515 -2.4072 0.3747 10 6 0.2228 -2.3630 1.2142 11 6 -0.4084 -3.5324 1.5714 12 6 0.0639 -4.7509 1.1079 13 6 1.1711 -4.8058 0.2758 14 6 1.6684 -6.1372 -0.2252 15 6 2.6917 -6.7034 0.7613 16 1 3.4743 -5.9618 0.9213 17 6 3.3177 -7.9616 0.1577 18 6 3.7434 -8.9143 1.3037 19 16 2.3011 -8.7592 2.4356 20 6 1.9902 -6.9833 2.1001 21 6 1.8217 -3.6492 -0.0898 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1465 -1.4152 1.5766 24 1 -1.2750 -3.5010 2.2151 25 1 -0.4374 -5.6637 1.3937 26 1 0.8299 -6.8278 -0.3152 27 1 2.1376 -6.0063 -1.2003 28 1 2.5906 -8.4606 -0.4829 29 1 4.1930 -7.6880 -0.4313 30 1 4.6589 -8.5694 1.7843 31 1 3.8526 -9.9375 0.9443 32 1 2.4210 -6.3675 2.8895 33 1 0.9200 -6.7957 2.0134 34 1 2.6872 -3.6947 -0.7343 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:02 Heat of formation + Delta-G solvation = -17.356266 kcal Electronic energy + Delta-G solvation = -15433.518210 eV Core-core repulsion = 13034.401264 eV Total energy + Delta-G solvation = -2399.116946 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.88185 -37.75779 -35.51090 -32.80575 -31.73433 -30.10609 -27.72057 -27.17746 -24.71314 -22.59993 -21.86393 -20.83975 -18.82588 -17.65195 -17.20003 -16.63701 -16.35637 -15.58623 -15.43324 -15.02059 -14.61660 -14.40022 -13.92477 -13.55170 -13.34899 -13.15244 -12.97399 -12.75998 -12.60262 -12.51727 -12.31384 -12.11432 -11.96426 -11.52272 -11.30492 -11.19365 -10.98948 -10.79813 -9.36185 -9.08960 -8.70896 -8.63104 -6.33957 0.94263 1.02248 1.11436 1.37233 1.43750 1.48911 1.54172 2.20318 2.73341 3.60378 3.67361 3.84603 3.96645 4.16901 4.25355 4.42371 4.46627 4.58351 4.66665 4.69801 4.82655 4.87251 4.90834 5.05965 5.07062 5.14110 5.20574 5.31055 5.37143 5.55207 5.74861 6.05359 6.13485 6.23073 6.41084 6.72519 6.95838 7.06920 8.34119 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.041431 B = 0.004893 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.653282 B = 5720.678537 C = 6035.694426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.195 4.195 11 C -0.111 4.111 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.058 4.058 15 C -0.082 4.082 16 H 0.070 0.930 17 C -0.116 4.116 18 C -0.051 4.051 19 S -0.358 6.358 20 C -0.050 4.050 21 C -0.233 4.233 22 H 0.287 0.713 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -11.173 0.208 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.215 4.215 11 C -0.130 4.130 12 C -0.250 4.250 13 C -0.057 4.057 14 C -0.096 4.096 15 C -0.103 4.103 16 H 0.088 0.912 17 C -0.154 4.154 18 C -0.198 4.198 19 S -0.133 6.133 20 C -0.198 4.198 21 C -0.253 4.253 22 H 0.097 0.903 23 H 0.113 0.887 24 H 0.123 0.877 25 H 0.131 0.869 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.157 -11.828 0.929 12.937 hybrid contribution 0.442 2.009 -0.524 2.123 sum 5.599 -9.819 0.405 11.310 Atomic orbital electron populations 1.69887 1.09058 1.30397 1.36130 1.26740 0.95436 1.04496 0.91242 0.85239 0.79212 0.76148 0.79388 1.18659 1.19158 1.18267 1.19817 0.98273 0.92640 1.42593 0.90775 1.17968 0.91855 0.93270 0.89249 1.21258 1.00621 0.96943 1.02652 1.20958 0.98860 0.93344 0.99815 1.20564 1.01282 0.96154 1.07048 1.19633 0.95008 0.94466 0.96574 1.20603 0.98244 0.92661 0.98057 1.21580 0.97231 0.98475 0.92964 0.91192 1.22410 1.02020 0.93253 0.97743 1.24407 0.95934 1.04387 0.95114 1.87836 1.44060 1.17102 1.64289 1.24084 1.04913 0.91294 0.99485 1.21003 1.04187 0.92595 1.07488 0.90282 0.88652 0.87747 0.86948 0.90638 0.90624 0.89627 0.88189 0.88358 0.85675 0.90582 0.88330 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.20 10.97 21.83 0.24 -43.96 16 2 C 0.04 1.80 5.14 85.26 0.44 2.24 16 3 Si 0.98 38.60 29.59 68.60 2.03 40.63 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.50 -27.47 9.05 23.46 0.21 -27.26 16 8 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 9 C 0.08 4.28 5.57 -21.29 -0.12 4.16 16 10 C -0.20 -10.46 8.70 22.73 0.20 -10.27 16 11 C -0.11 -5.22 10.02 22.22 0.22 -4.99 16 12 C -0.23 -9.69 8.50 22.46 0.19 -9.50 16 13 C -0.06 -2.32 4.83 -19.92 -0.10 -2.41 16 14 C -0.06 -1.75 4.45 29.85 0.13 -1.62 16 15 C -0.08 -2.17 2.67 -10.57 -0.03 -2.19 16 16 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 17 C -0.12 -2.20 5.78 31.26 0.18 -2.02 16 18 C -0.05 -0.92 7.52 72.66 0.55 -0.37 16 19 S -0.36 -9.38 23.22 -56.49 -1.31 -10.69 16 20 C -0.05 -1.43 6.39 72.22 0.46 -0.97 16 21 C -0.23 -11.14 9.44 22.73 0.21 -10.93 16 22 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 23 H 0.10 5.40 6.18 -2.91 -0.02 5.38 16 24 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 25 H 0.11 4.09 6.80 -2.91 -0.02 4.07 16 26 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 27 H 0.08 2.15 8.07 -2.38 -0.02 2.13 16 28 H 0.09 1.55 7.83 -2.39 -0.02 1.53 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.10 3.03 5.19 -2.39 -0.01 3.02 16 34 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -59.64 288.34 4.59 -55.05 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.08 Total: 25.09 kcal Atomic # 6 Polarization: -68.68 SS G_CDS: 2.55 Total: -66.12 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.24 Total: -43.96 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.31 Total: -10.69 kcal Total: -59.64 4.59 -55.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.694 kcal (2) G-P(sol) polarization free energy of solvation -59.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds