Wall clock time and date at job start Mon Mar 30 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.50694 * 109.47330 * 293.95439 * 3 2 1 5 5 H 1.07996 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00432 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00576 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99573 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.46580 * 90.00339 * 8 6 4 10 10 H 1.48500 * 109.47299 * 209.99867 * 8 6 4 11 11 H 1.48495 * 109.47472 * 330.00574 * 8 6 4 12 12 C 1.39017 * 110.99724 * 123.95175 * 2 1 3 13 13 C 1.38634 * 120.72191 * 295.76534 * 12 2 1 14 14 C 1.38309 * 119.37278 * 179.76810 * 13 12 2 15 15 N 1.31412 * 121.15261 * 0.49983 * 14 13 12 16 16 C 1.33616 * 122.32342 * 359.75945 * 15 14 13 17 17 S 1.76025 * 130.24647 * 179.97438 * 16 15 14 18 18 C 1.75284 * 92.22466 * 180.02562 * 17 16 15 19 19 C 1.31798 * 111.39054 * 0.02562 * 18 17 16 20 20 C 1.39590 * 120.24314 * 0.02562 * 16 15 14 21 21 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 22 22 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 24 24 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 25 25 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 26 26 H 0.96996 * 119.99898 * 179.97438 * 7 6 4 27 27 H 1.08001 * 120.31166 * 0.02562 * 13 12 2 28 28 H 1.07999 * 119.42232 * 180.26152 * 14 13 12 29 29 H 1.07994 * 124.30675 * 179.97438 * 18 17 16 30 30 H 1.07999 * 122.58564 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0276 3.3491 -1.5289 7 7 1.7143 3.9390 -2.6618 8 14 3.0008 4.2758 -0.2313 9 1 4.4532 4.0624 -0.4557 10 1 2.6936 5.7258 -0.3236 11 1 2.6295 3.7760 1.1169 12 6 1.9672 -0.7248 1.0766 13 6 1.7373 -0.3075 2.3785 14 6 2.2419 -1.0526 3.4288 15 7 2.9430 -2.1430 3.2137 16 6 3.2031 -2.5940 1.9831 17 16 4.1078 -4.0098 1.4583 18 6 3.8281 -3.6462 -0.2334 19 6 3.1130 -2.5484 -0.3772 20 6 2.7275 -1.9044 0.8665 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5611 1.9274 0.8310 25 1 3.0797 1.3444 0.1083 26 1 1.9889 4.8551 -2.8237 27 1 1.1661 0.5887 2.5708 28 1 2.0597 -0.7305 4.4434 29 1 4.1957 -4.2449 -1.0535 30 1 2.8352 -2.1579 -1.3451 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260052621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:10 Heat of formation + Delta-G solvation = 67.879568 kcal Electronic energy + Delta-G solvation = -15420.319549 eV Core-core repulsion = 12921.358363 eV Total energy + Delta-G solvation = -2498.961186 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31724 -36.97402 -35.53215 -32.72190 -30.66886 -29.46779 -28.00588 -25.51646 -24.08192 -22.75273 -20.95286 -20.55737 -17.87201 -16.77712 -16.67600 -15.54131 -15.20279 -14.93537 -14.38293 -14.18467 -13.78844 -13.58523 -13.11714 -12.46603 -12.37149 -12.21774 -11.76134 -11.61327 -11.27703 -10.89525 -10.78896 -10.66619 -10.11047 -9.61008 -9.47876 -9.38996 -8.69514 -8.58155 -7.85092 -7.78778 -6.17552 -4.16900 0.73457 1.19108 1.39080 2.05060 2.45613 3.20536 3.28021 3.29530 3.81767 4.29792 4.32596 4.60905 4.83527 5.03749 5.14316 5.24047 5.38074 5.60500 5.82425 5.92547 5.94687 6.08871 6.28118 6.40010 6.51402 6.57655 6.65902 6.77185 7.41458 7.54953 7.87125 7.87805 8.48328 8.89002 9.42357 10.94912 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.028953 B = 0.006588 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.846945 B = 4248.957503 C = 4496.673930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.505 5.505 3 C 0.169 3.831 4 C -0.515 4.515 5 H 0.084 0.916 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.871 3.129 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.205 3.795 13 C -0.220 4.220 14 C 0.141 3.859 15 N -0.475 5.475 16 C 0.063 3.937 17 S 0.107 5.893 18 C -0.211 4.211 19 C -0.078 4.078 20 C -0.114 4.114 21 H 0.090 0.910 22 H 0.052 0.948 23 H 0.023 0.977 24 H -0.002 1.002 25 H 0.026 0.974 26 H 0.266 0.734 27 H 0.139 0.861 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 -12.199 8.511 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.226 5.226 3 C 0.045 3.955 4 C -0.553 4.553 5 H 0.102 0.898 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.192 1.192 12 C 0.100 3.900 13 C -0.245 4.245 14 C -0.027 4.027 15 N -0.186 5.186 16 C -0.181 4.181 17 S 0.365 5.635 18 C -0.345 4.345 19 C -0.108 4.108 20 C -0.126 4.126 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.016 0.984 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.157 0.843 28 H 0.178 0.822 29 H 0.188 0.812 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.757 -13.921 9.291 16.963 hybrid contribution -0.752 2.742 -0.111 2.846 sum 2.005 -11.179 9.180 14.603 Atomic orbital electron populations 1.22308 0.85394 1.00352 1.02272 1.59470 1.08551 1.17258 1.37361 1.20304 0.95106 0.81939 0.98160 1.20921 1.36362 0.97354 1.00669 0.89791 1.24848 0.95566 0.97247 0.95274 1.69871 1.46328 1.13387 1.23696 0.86922 0.81084 0.79534 0.82645 1.19997 1.20908 1.19224 1.19266 0.90342 0.90454 0.89980 1.22652 1.04918 1.02966 0.93936 1.22542 0.91655 0.89182 0.99331 1.67215 1.15286 1.14832 1.21308 1.23507 1.02307 1.00180 0.92119 1.83971 1.56530 1.24057 0.98912 1.25068 1.07130 1.02870 0.99399 1.20892 0.97263 0.94016 0.98614 1.20031 1.02144 0.97091 0.93309 0.89094 0.92962 0.95821 0.98432 0.95628 0.92428 0.84314 0.82186 0.81177 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.09 60.07 0.55 1.32 16 2 N -0.51 -10.27 4.65 -179.64 -0.84 -11.11 16 3 C 0.17 3.96 3.37 -4.98 -0.02 3.94 16 4 C -0.51 -13.99 9.07 -34.44 -0.31 -14.30 16 5 H 0.08 2.46 7.35 -52.49 -0.39 2.07 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 8 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.20 3.78 4.73 -83.05 -0.39 3.38 16 13 C -0.22 -3.58 8.76 -39.41 -0.35 -3.92 16 14 C 0.14 2.08 11.16 -17.70 -0.20 1.88 16 15 N -0.48 -7.87 10.38 -11.85 -0.12 -7.99 16 16 C 0.06 1.06 7.65 -16.27 -0.12 0.93 16 17 S 0.11 1.44 23.24 -107.50 -2.50 -1.06 16 18 C -0.21 -2.70 11.02 28.84 0.32 -2.39 16 19 C -0.08 -1.21 10.28 -38.69 -0.40 -1.61 16 20 C -0.11 -2.01 6.06 -105.20 -0.64 -2.64 16 21 H 0.09 1.77 6.86 -51.93 -0.36 1.41 16 22 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 23 H 0.02 0.40 7.53 -51.93 -0.39 0.01 16 24 H 0.00 -0.05 6.57 -51.92 -0.34 -0.39 16 25 H 0.03 0.62 7.48 -51.93 -0.39 0.24 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.14 2.11 7.26 -52.49 -0.38 1.73 16 28 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.16 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 270.76 15.07 4.08 4.08 Total: -1.00 -30.25 270.76 -8.03 -38.28 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.10 Total: -1.23 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -1.66 Total: -11.46 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.19 Total: -44.83 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.50 Total: -1.06 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.25 -8.03 -38.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.164 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds