Wall clock time and date at job start Mon Mar 30 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.50694 * 109.47330 * 293.95439 * 3 2 1 5 5 H 1.07996 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00432 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00576 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99573 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.46580 * 90.00339 * 8 6 4 10 10 H 1.48500 * 109.47299 * 209.99867 * 8 6 4 11 11 H 1.48495 * 109.47472 * 330.00574 * 8 6 4 12 12 C 1.39017 * 110.99724 * 123.95175 * 2 1 3 13 13 C 1.38634 * 120.72191 * 295.76534 * 12 2 1 14 14 C 1.38309 * 119.37278 * 179.76810 * 13 12 2 15 15 N 1.31412 * 121.15261 * 0.49983 * 14 13 12 16 16 C 1.33616 * 122.32342 * 359.75945 * 15 14 13 17 17 S 1.76025 * 130.24647 * 179.97438 * 16 15 14 18 18 C 1.75284 * 92.22466 * 180.02562 * 17 16 15 19 19 C 1.31798 * 111.39054 * 0.02562 * 18 17 16 20 20 C 1.39590 * 120.24314 * 0.02562 * 16 15 14 21 21 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 22 22 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 24 24 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 25 25 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 26 26 H 0.96996 * 119.99898 * 179.97438 * 7 6 4 27 27 H 1.08001 * 120.31166 * 0.02562 * 13 12 2 28 28 H 1.07999 * 119.42232 * 180.26152 * 14 13 12 29 29 H 1.07994 * 124.30675 * 179.97438 * 18 17 16 30 30 H 1.07999 * 122.58564 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0276 3.3491 -1.5289 7 7 1.7143 3.9390 -2.6618 8 14 3.0008 4.2758 -0.2313 9 1 4.4532 4.0624 -0.4557 10 1 2.6936 5.7258 -0.3236 11 1 2.6295 3.7760 1.1169 12 6 1.9672 -0.7248 1.0766 13 6 1.7373 -0.3075 2.3785 14 6 2.2419 -1.0526 3.4288 15 7 2.9430 -2.1430 3.2137 16 6 3.2031 -2.5940 1.9831 17 16 4.1078 -4.0098 1.4583 18 6 3.8281 -3.6462 -0.2334 19 6 3.1130 -2.5484 -0.3772 20 6 2.7275 -1.9044 0.8665 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5611 1.9274 0.8310 25 1 3.0797 1.3444 0.1083 26 1 1.9889 4.8551 -2.8237 27 1 1.1661 0.5887 2.5708 28 1 2.0597 -0.7305 4.4434 29 1 4.1957 -4.2449 -1.0535 30 1 2.8352 -2.1579 -1.3451 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260052621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:10 Heat of formation + Delta-G solvation = 47.993936 kcal Electronic energy + Delta-G solvation = -15421.181855 eV Core-core repulsion = 12921.358363 eV Total energy + Delta-G solvation = -2499.823492 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57284 -38.46946 -36.67469 -34.78835 -32.08270 -30.70541 -29.79505 -27.03077 -25.34469 -24.29118 -22.42688 -21.83587 -19.41575 -18.53688 -17.95289 -16.73477 -16.69985 -16.49171 -15.78244 -15.68826 -15.18507 -14.86989 -14.65692 -14.42557 -13.56420 -13.47118 -13.30168 -13.06681 -12.77364 -12.61443 -12.43754 -12.01127 -11.89087 -11.57542 -10.91820 -10.83764 -10.62667 -9.74295 -9.40650 -8.91084 -8.32559 -6.37049 -0.43416 -0.09278 0.27942 0.94202 1.30744 1.32276 1.33270 1.42698 2.29739 2.59250 2.86513 3.00895 3.52118 3.69005 3.83221 3.99572 4.24008 4.39822 4.46400 4.51676 4.71537 4.75089 4.81112 4.97465 5.05581 5.12949 5.30355 5.39286 5.46234 5.83271 6.17565 6.57830 6.68229 6.68912 7.26186 8.83254 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.028953 B = 0.006588 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.846945 B = 4248.957503 C = 4496.673930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.516 5.516 3 C 0.183 3.817 4 C -0.518 4.518 5 H 0.046 0.954 6 C 0.016 3.984 7 N -0.941 5.941 8 Si 0.937 3.063 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.248 1.248 12 C 0.173 3.827 13 C -0.218 4.218 14 C 0.146 3.854 15 N -0.485 5.485 16 C 0.036 3.964 17 S 0.151 5.849 18 C -0.186 4.186 19 C -0.113 4.113 20 C -0.131 4.131 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.005 0.995 25 H 0.017 0.983 26 H 0.269 0.731 27 H 0.148 0.852 28 H 0.201 0.799 29 H 0.207 0.793 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -13.285 10.722 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.237 5.237 3 C 0.058 3.942 4 C -0.556 4.556 5 H 0.065 0.935 6 C -0.182 4.182 7 N -0.581 5.581 8 Si 0.761 3.239 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.172 1.172 12 C 0.069 3.931 13 C -0.243 4.243 14 C -0.023 4.023 15 N -0.196 5.196 16 C -0.207 4.207 17 S 0.410 5.590 18 C -0.319 4.319 19 C -0.142 4.142 20 C -0.143 4.143 21 H 0.085 0.915 22 H 0.090 0.910 23 H 0.055 0.945 24 H 0.022 0.978 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.218 0.782 29 H 0.224 0.776 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.799 -15.042 11.514 19.320 hybrid contribution -1.086 2.918 -0.837 3.224 sum 2.713 -12.123 10.676 16.381 Atomic orbital electron populations 1.22259 0.84534 1.01455 1.01622 1.59236 1.09523 1.15556 1.39371 1.19980 0.94558 0.83711 0.95959 1.21125 1.35413 0.97514 1.01541 0.93542 1.25717 0.96722 0.98306 0.97457 1.70015 1.48109 1.13992 1.26008 0.85862 0.79356 0.78155 0.80541 1.19618 1.20318 1.17201 1.19363 0.92186 0.91386 0.90191 1.22795 1.04707 1.03347 0.93448 1.23142 0.90279 0.88171 1.00680 1.67328 1.15627 1.15457 1.21204 1.23970 1.03162 1.01568 0.92026 1.83832 1.54917 1.21903 0.98391 1.25516 1.04379 1.01506 1.00488 1.20867 0.99855 0.95692 0.97809 1.20271 1.02229 0.97251 0.94506 0.91505 0.90981 0.94536 0.97781 0.96460 0.92238 0.83390 0.78201 0.77609 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.73 9.09 127.69 1.16 2.89 16 2 N -0.52 -21.12 4.65 -722.27 -3.36 -24.48 16 3 C 0.18 8.58 3.37 85.56 0.29 8.86 16 4 C -0.52 -28.93 9.07 25.60 0.23 -28.70 16 5 H 0.05 2.87 7.35 -2.91 -0.02 2.85 16 6 C 0.02 0.93 5.47 84.66 0.46 1.39 16 7 N -0.94 -57.27 13.96 21.45 0.30 -56.97 16 8 Si 0.94 42.89 27.47 68.60 1.88 44.77 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 12 C 0.17 6.27 4.73 39.01 0.18 6.46 16 13 C -0.22 -6.70 8.76 22.38 0.20 -6.50 16 14 C 0.15 3.89 11.16 84.77 0.95 4.84 16 15 N -0.48 -14.93 10.38 -191.42 -1.99 -16.92 16 16 C 0.04 1.15 7.65 84.75 0.65 1.80 16 17 S 0.15 3.64 23.24 -56.49 -1.31 2.33 16 18 C -0.19 -4.29 11.02 67.05 0.74 -3.55 16 19 C -0.11 -3.42 10.28 23.31 0.24 -3.18 16 20 C -0.13 -4.49 6.06 -20.24 -0.12 -4.61 16 21 H 0.07 2.72 6.86 -2.39 -0.02 2.70 16 22 H 0.07 2.29 8.12 -2.38 -0.02 2.27 16 23 H 0.04 1.21 7.53 -2.39 -0.02 1.19 16 24 H 0.00 0.21 6.57 -2.38 -0.02 0.19 16 25 H 0.02 0.84 7.48 -2.39 -0.02 0.82 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.15 4.16 7.26 -2.91 -0.02 4.14 16 28 H 0.20 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.21 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -66.31 270.76 1.59 -64.72 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.09 Total: 6.86 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 4.98 Total: -20.31 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -5.05 Total: -98.37 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.31 Total: 2.33 kcal Total: -66.31 1.59 -64.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.713 kcal (2) G-P(sol) polarization free energy of solvation -66.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds