Wall clock time and date at job start Mon Mar 30 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00209 * 2 1 4 4 H 1.48504 * 109.46687 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46832 * 119.99802 * 3 2 1 6 6 H 1.48495 * 109.47137 * 239.99980 * 3 2 1 7 7 C 1.37879 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99975 * 16.64531 * 7 2 1 9 9 C 1.50701 * 119.99894 * 196.64953 * 7 2 1 10 10 H 1.08997 * 109.46896 * 305.65623 * 9 7 2 11 11 C 1.53003 * 109.47381 * 65.65429 * 9 7 2 12 12 N 1.46893 * 109.47219 * 185.83958 * 11 9 7 13 13 C 1.50701 * 109.46884 * 185.65368 * 9 7 2 14 14 C 1.36212 * 119.79105 * 300.00016 * 13 9 7 15 15 C 1.38743 * 120.78382 * 180.02562 * 14 13 9 16 16 C 1.37703 * 120.06242 * 359.97438 * 15 14 13 17 17 C 1.39291 * 119.95341 * 0.02562 * 16 15 14 18 18 S 1.76081 * 131.73187 * 180.02562 * 17 16 15 19 19 C 1.70646 * 90.82548 * 180.02562 * 18 17 16 20 20 N 1.27931 * 111.53486 * 359.97438 * 19 18 17 21 21 C 1.34665 * 117.84470 * 359.76632 * 20 19 18 22 22 H 0.96993 * 120.00209 * 174.17836 * 1 2 3 23 23 H 1.09000 * 109.46619 * 305.84109 * 11 9 7 24 24 H 1.09005 * 109.46697 * 65.83702 * 11 9 7 25 25 H 1.00903 * 111.00407 * 180.02562 * 12 11 9 26 26 H 1.00904 * 110.99862 * 303.95523 * 12 11 9 27 27 H 1.08003 * 119.60893 * 359.97438 * 14 13 9 28 28 H 1.07995 * 119.97232 * 179.97438 * 15 14 13 29 29 H 1.08000 * 120.01835 * 179.97438 * 16 15 14 30 30 H 1.07997 * 124.23770 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 1.4985 -2.1096 -0.2688 9 6 3.4642 -1.2215 0.3734 10 1 4.0123 -0.5155 -0.2503 11 6 3.6213 -0.8313 1.8444 12 7 5.0490 -0.7220 2.1722 13 6 4.0111 -2.6096 0.1607 14 6 3.4744 -3.6602 0.8417 15 6 3.9623 -4.9465 0.6621 16 6 5.0008 -5.1745 -0.2129 17 6 5.5621 -4.1124 -0.9179 18 16 6.8726 -4.0472 -2.0921 19 6 6.6800 -2.3591 -2.2503 20 7 5.7389 -1.9216 -1.5022 21 6 5.0719 -2.8130 -0.7445 22 1 -0.4850 -0.8356 -0.0852 23 1 3.1337 0.1276 2.0200 24 1 3.1613 -1.5934 2.4736 25 1 5.1794 -0.4654 3.1394 26 1 5.5361 -1.5790 1.9570 27 1 2.6599 -3.4896 1.5302 28 1 3.5272 -5.7698 1.2092 29 1 5.3803 -6.1760 -0.3518 30 1 7.2772 -1.7377 -2.9011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260054171.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:48 Heat of formation + Delta-G solvation = 28.941361 kcal Electronic energy + Delta-G solvation = -15734.017906 eV Core-core repulsion = 13233.368232 eV Total energy + Delta-G solvation = -2500.649674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.45301 -38.31204 -36.81254 -34.50047 -32.63737 -30.84486 -29.51803 -25.87285 -25.21521 -24.33945 -22.39407 -21.58879 -19.64151 -18.89802 -17.32732 -17.02202 -16.72133 -16.38006 -15.71950 -15.57119 -15.39171 -15.04631 -14.55620 -14.20691 -13.54724 -13.37660 -13.18672 -12.91429 -12.62564 -12.59905 -11.97079 -11.75739 -11.53810 -11.16531 -10.78826 -10.47050 -10.43570 -9.65352 -9.53178 -8.98592 -8.64972 -6.39700 -0.45792 0.25209 0.39630 0.77770 1.44668 1.50224 1.50610 1.71728 2.41810 2.77455 3.02076 3.23402 3.68519 3.84278 4.05613 4.24013 4.32391 4.38129 4.49079 4.63354 4.74642 4.94883 5.10303 5.19798 5.27466 5.48075 5.71890 5.82862 5.92094 6.02951 6.29824 6.54299 6.67655 6.77637 7.34853 8.61522 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.008297 C = 0.007624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.755325 B = 3374.045196 C = 3671.754828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 1.081 2.919 4 H -0.287 1.287 5 H -0.244 1.244 6 H -0.279 1.279 7 C -0.587 4.587 8 H 0.024 0.976 9 C 0.057 3.943 10 H 0.032 0.968 11 C 0.070 3.930 12 N -0.848 5.848 13 C -0.005 4.005 14 C -0.128 4.128 15 C -0.089 4.089 16 C -0.091 4.091 17 C -0.196 4.196 18 S 0.131 5.869 19 C 0.056 3.944 20 N -0.493 5.493 21 C 0.050 3.950 22 H 0.254 0.746 23 H 0.060 0.940 24 H 0.019 0.981 25 H 0.344 0.656 26 H 0.335 0.665 27 H 0.118 0.882 28 H 0.165 0.835 29 H 0.162 0.838 30 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.540 -10.211 -0.049 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.211 4.211 3 Si 0.904 3.096 4 H -0.213 1.213 5 H -0.169 1.169 6 H -0.205 1.205 7 C -0.626 4.626 8 H 0.043 0.957 9 C 0.038 3.962 10 H 0.050 0.950 11 C -0.060 4.060 12 N -0.378 5.378 13 C -0.008 4.008 14 C -0.149 4.149 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.315 4.315 18 S 0.384 5.616 19 C -0.248 4.248 20 N -0.206 5.206 21 C -0.068 4.068 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.037 0.963 25 H 0.157 0.843 26 H 0.147 0.853 27 H 0.136 0.864 28 H 0.182 0.818 29 H 0.180 0.820 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 15.939 -8.060 -1.020 17.890 hybrid contribution -1.472 -2.032 0.896 2.664 sum 14.468 -10.092 -0.124 17.640 Atomic orbital electron populations 1.70983 1.07846 1.30129 1.48052 1.26946 0.96093 1.05627 0.92406 0.83580 0.74505 0.72333 0.79217 1.21308 1.16869 1.20499 1.22086 0.95235 0.94712 1.50523 0.95730 1.18004 0.94271 0.90612 0.93361 0.95035 1.22166 0.87794 0.99539 0.96549 1.58742 1.11458 1.40135 1.27463 1.19561 0.91222 0.97475 0.92565 1.20702 1.00230 0.92836 1.01095 1.21459 0.95479 0.96560 0.97502 1.20602 0.96878 0.97705 0.96217 1.24202 1.03588 0.98235 1.05443 1.83296 1.31768 1.07643 1.38922 1.28721 0.97825 0.97833 1.00449 1.66142 1.08226 1.38076 1.08109 1.19209 0.99373 0.88080 1.00171 0.93665 0.92218 0.96250 0.84263 0.85315 0.86352 0.81757 0.82020 0.74952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.16 13.69 21.45 0.29 -58.87 16 2 C -0.01 -0.70 5.31 84.65 0.45 -0.25 16 3 Si 1.08 53.77 26.28 68.60 1.80 55.57 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.24 -11.12 5.70 99.48 0.57 -10.55 16 6 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.59 -34.15 8.51 25.60 0.22 -33.93 16 8 H 0.02 1.55 7.76 -2.91 -0.02 1.53 16 9 C 0.06 2.84 1.74 -12.28 -0.02 2.82 16 10 H 0.03 1.70 6.19 -2.39 -0.01 1.68 16 11 C 0.07 3.10 5.81 86.31 0.50 3.60 16 12 N -0.85 -31.27 9.62 -186.72 -1.80 -33.06 16 13 C -0.01 -0.23 3.85 -19.68 -0.08 -0.31 16 14 C -0.13 -4.82 8.45 21.92 0.19 -4.64 16 15 C -0.09 -2.53 10.04 22.26 0.22 -2.30 16 16 C -0.09 -2.44 10.07 22.40 0.23 -2.22 16 17 C -0.20 -6.20 6.56 22.94 0.15 -6.05 16 18 S 0.13 3.06 23.17 -56.49 -1.31 1.76 16 19 C 0.06 1.55 12.10 130.81 1.58 3.13 16 20 N -0.49 -19.09 10.03 -194.77 -1.95 -21.05 16 21 C 0.05 2.00 6.76 39.78 0.27 2.27 16 22 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 23 H 0.06 2.81 4.79 -2.39 -0.01 2.80 16 24 H 0.02 0.83 7.15 -2.38 -0.02 0.82 16 25 H 0.34 10.45 9.08 -89.69 -0.81 9.63 16 26 H 0.33 11.89 8.11 -89.69 -0.73 11.17 16 27 H 0.12 4.67 7.44 -2.91 -0.02 4.65 16 28 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 29 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.23 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -72.55 265.32 0.22 -72.33 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -0.53 Total: 21.21 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.71 Total: -37.89 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -3.46 Total: -112.98 kcal Atomic # 14 Polarization: 53.77 SS G_CDS: 1.80 Total: 55.57 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.31 Total: 1.76 kcal Total: -72.55 0.22 -72.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054171.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.271 kcal (2) G-P(sol) polarization free energy of solvation -72.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds