Wall clock time and date at job start Mon Mar 30 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.38259 * 120.00555 * 265.00127 * 10 9 7 12 12 C 1.38210 * 120.00320 * 179.97438 * 11 10 9 13 13 C 1.38260 * 120.00073 * 359.97438 * 12 11 10 14 14 C 1.38215 * 119.99780 * 0.02562 * 13 12 11 15 15 C 1.38220 * 119.99983 * 84.72651 * 10 9 7 16 16 C 1.50698 * 119.99779 * 0.02562 * 15 10 9 17 17 H 1.09001 * 108.83097 * 1.46553 * 16 15 10 18 18 C 1.52334 * 108.87190 * 120.00085 * 16 15 10 19 19 C 1.54258 * 112.59061 * 120.81605 * 18 16 15 20 20 S 1.83964 * 102.57901 * 24.52937 * 19 18 16 21 21 C 1.54263 * 108.86651 * 243.07739 * 16 15 10 22 22 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 24 24 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 25 25 H 1.08006 * 119.99077 * 0.02562 * 11 10 9 26 26 H 1.08002 * 119.99481 * 180.02562 * 12 11 10 27 27 H 1.07996 * 119.99958 * 180.02562 * 13 12 11 28 28 H 1.07997 * 119.99828 * 180.02562 * 14 13 12 29 29 H 1.09005 * 108.86341 * 241.63819 * 18 16 15 30 30 H 1.08995 * 108.86761 * 0.13829 * 18 16 15 31 31 H 1.08999 * 110.78406 * 142.79894 * 19 18 16 32 32 H 1.08991 * 110.78493 * 266.25783 * 19 18 16 33 33 H 1.09004 * 110.78140 * 332.92113 * 21 16 15 34 34 H 1.08992 * 110.79141 * 96.37527 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6445 0.0015 11 6 2.5995 -4.2384 -1.1913 12 6 3.4980 -5.2885 -1.1915 13 6 4.0283 -5.7449 0.0010 14 6 3.6593 -5.1513 1.1934 15 6 2.7640 -4.0978 1.1932 16 6 2.3661 -3.4469 2.4928 17 1 1.6362 -2.6643 2.2853 18 6 1.7227 -4.4948 3.3920 19 6 2.4706 -4.6671 4.7301 20 16 3.3130 -3.0440 4.9302 21 6 3.6145 -2.8039 3.1315 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5563 0.8920 24 1 0.6242 -2.5575 -0.8880 25 1 2.1862 -3.8810 -2.1229 26 1 3.7865 -5.7520 -2.1234 27 1 4.7307 -6.5652 0.0008 28 1 4.0738 -5.5075 2.1249 29 1 0.6943 -4.1985 3.5985 30 1 1.7150 -5.4511 2.8691 31 1 1.7689 -4.8419 5.5457 32 1 3.1988 -5.4754 4.6649 33 1 4.5201 -3.3235 2.8183 34 1 3.6714 -1.7433 2.8869 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260058094.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:21 Heat of formation + Delta-G solvation = 1.421309 kcal Electronic energy + Delta-G solvation = -15967.308812 eV Core-core repulsion = 13569.006123 eV Total energy + Delta-G solvation = -2398.302689 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40240 -35.78585 -33.87937 -31.30702 -30.58261 -28.58556 -26.69489 -24.91977 -23.22720 -22.15863 -20.60364 -19.21562 -16.93836 -16.49986 -16.04033 -15.27872 -14.56565 -14.39504 -13.77466 -13.63312 -13.44799 -13.21862 -12.58246 -12.36100 -11.99633 -11.87236 -11.62792 -11.36441 -11.22129 -11.16456 -10.70104 -10.62740 -10.22133 -10.11809 -9.68696 -9.65012 -9.01708 -8.41414 -8.25750 -7.83990 -7.52095 -6.42429 -4.14764 1.82803 1.98563 2.10765 2.55985 3.40607 3.43588 3.59255 4.27109 4.51169 4.80072 4.92450 5.08755 5.28904 5.33007 5.37788 5.41343 5.50555 5.54797 5.68992 5.73778 5.94499 5.99228 6.04823 6.16351 6.35286 6.43536 6.54497 6.69069 6.88769 6.97985 7.08736 7.14845 7.57138 7.58376 8.05810 8.38244 8.78502 9.55922 10.96101 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.009562 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.316875 B = 2927.674232 C = 4086.718670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.589 4.589 8 H 0.050 0.950 9 C 0.034 3.966 10 C -0.025 4.025 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.147 4.147 14 C -0.118 4.118 15 C -0.082 4.082 16 C -0.057 4.057 17 H 0.115 0.885 18 C -0.119 4.119 19 C -0.062 4.062 20 S -0.320 6.320 21 C -0.039 4.039 22 H 0.269 0.731 23 H 0.023 0.977 24 H 0.017 0.983 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -10.590 4.414 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.185 4.185 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.627 4.627 8 H 0.069 0.931 9 C -0.002 4.002 10 C -0.025 4.025 11 C -0.143 4.143 12 C -0.142 4.142 13 C -0.165 4.165 14 C -0.136 4.136 15 C -0.083 4.083 16 C -0.076 4.076 17 H 0.133 0.867 18 C -0.158 4.158 19 C -0.210 4.210 20 S -0.093 6.093 21 C -0.187 4.187 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.670 -8.252 5.437 11.393 hybrid contribution 0.070 -2.372 -1.131 2.629 sum 5.740 -10.625 4.306 12.821 Atomic orbital electron populations 1.70768 1.06862 1.30630 1.46236 1.25813 0.96465 1.02515 0.93681 0.83551 0.74804 0.75207 0.76857 1.21426 1.21356 1.20882 1.21843 0.94241 0.90570 1.56078 0.93127 1.18514 0.93290 0.91460 0.96974 1.20340 0.96014 0.94592 0.91537 1.21064 0.98732 0.96404 0.98054 1.21027 0.98073 0.97612 0.97463 1.20852 1.01748 1.01139 0.92775 1.20825 0.98475 0.96838 0.97455 1.19597 0.98203 0.96275 0.94272 1.20778 0.97203 0.97664 0.91994 0.86710 1.22148 1.00419 0.99852 0.93340 1.24116 1.00843 0.95610 1.00408 1.87849 1.78046 1.28300 1.15113 1.24287 0.99990 1.05547 0.88875 0.92036 0.95879 0.96469 0.86565 0.87062 0.87140 0.87192 0.90666 0.90671 0.88212 0.89771 0.89627 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.76 13.65 55.43 0.76 -26.00 16 2 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 3 Si 1.07 24.88 29.90 -169.99 -5.08 19.80 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.59 -15.82 8.89 -34.44 -0.31 -16.13 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 9 C 0.03 0.83 3.72 -29.04 -0.11 0.72 16 10 C -0.02 -0.51 5.07 -104.62 -0.53 -1.04 16 11 C -0.12 -2.36 9.68 -39.58 -0.38 -2.74 16 12 C -0.12 -1.99 10.05 -39.58 -0.40 -2.38 16 13 C -0.15 -2.23 10.05 -39.58 -0.40 -2.62 16 14 C -0.12 -1.87 8.05 -39.58 -0.32 -2.19 16 15 C -0.08 -1.50 4.48 -104.62 -0.47 -1.97 16 16 C -0.06 -0.99 2.63 -91.45 -0.24 -1.23 16 17 H 0.11 2.40 5.34 -51.93 -0.28 2.12 16 18 C -0.12 -1.70 5.75 -26.41 -0.15 -1.85 16 19 C -0.06 -0.78 7.46 37.82 0.28 -0.50 16 20 S -0.32 -5.06 23.27 -107.50 -2.50 -7.56 16 21 C -0.04 -0.66 6.85 37.82 0.26 -0.40 16 22 H 0.27 7.85 7.22 -40.82 -0.29 7.56 16 23 H 0.02 0.58 6.24 -51.93 -0.32 0.25 16 24 H 0.02 0.44 7.92 -51.93 -0.41 0.03 16 25 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.11 1.52 7.98 -52.49 -0.42 1.10 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.02 7.05 -51.93 -0.37 0.66 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.36 7.16 -51.93 -0.37 0.99 16 34 H 0.11 2.05 8.14 -51.93 -0.42 1.62 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -28.77 289.68 -9.95 -38.71 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.63 Total: 2.58 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: -2.86 Total: -31.89 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.76 Total: -26.00 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -2.50 Total: -7.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.77 -9.95 -38.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058094.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.136 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds