Wall clock time and date at job start Mon Mar 30 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35872 * 117.00307 * 2 1 4 4 C 1.37640 * 119.88093 * 359.97438 * 3 2 1 5 5 C 1.38769 * 120.38345 * 180.02562 * 4 3 2 6 6 C 1.37467 * 120.23831 * 359.95135 * 5 4 3 7 7 C 1.39917 * 120.43387 * 0.06686 * 6 5 4 8 8 S 1.75935 * 130.46029 * 179.97438 * 7 6 5 9 9 C 1.75303 * 92.19281 * 179.97438 * 8 7 6 10 10 C 1.31789 * 111.38950 * 0.26447 * 9 8 7 11 11 C 1.50702 * 122.55403 * 179.71006 * 10 9 8 12 12 C 1.50695 * 109.47343 * 265.02184 * 11 10 9 13 13 H 1.08005 * 119.99761 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00029 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00201 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00170 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46931 * 90.00441 * 16 14 12 18 18 H 1.48495 * 109.47584 * 210.00348 * 16 14 12 19 19 H 1.48498 * 109.47142 * 330.00607 * 16 14 12 20 20 C 1.39649 * 119.87393 * 359.95615 * 7 6 5 21 21 H 1.09000 * 109.46832 * 59.99908 * 1 2 3 22 22 H 1.08999 * 109.47051 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46881 * 299.99577 * 1 2 3 24 24 H 1.08000 * 119.80823 * 359.97438 * 4 3 2 25 25 H 1.07992 * 119.88115 * 179.97438 * 5 4 3 26 26 H 1.07998 * 119.78401 * 180.02562 * 6 5 4 27 27 H 1.08002 * 124.30165 * 179.97438 * 9 8 7 28 28 H 1.09000 * 109.46896 * 25.02798 * 11 10 9 29 29 H 1.09008 * 109.46737 * 145.02308 * 11 10 9 30 30 H 0.96992 * 120.00725 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2939 2.3634 -0.0005 5 6 1.9131 3.6053 -0.0011 6 6 3.2849 3.6949 -0.0001 7 6 4.0708 2.5373 0.0001 8 16 5.8195 2.3446 0.0007 9 6 5.6943 0.5960 0.0013 10 6 4.4360 0.2043 -0.0046 11 6 4.0394 -1.2496 -0.0120 12 6 3.7930 -1.6959 -1.4301 13 1 3.9122 -0.9968 -2.2447 14 6 3.4166 -2.9970 -1.6878 15 7 3.2719 -3.8485 -0.6959 16 14 3.1119 -3.5505 -3.4456 17 1 4.3774 -4.0635 -4.0295 18 1 2.0899 -4.6278 -3.4554 19 1 2.6263 -2.4003 -4.2496 20 6 3.4596 1.2817 0.0002 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2157 2.3011 -0.0014 25 1 1.3152 4.5046 -0.0019 26 1 3.7591 4.6652 -0.0001 27 1 6.5408 -0.0748 0.0013 28 1 4.8407 -1.8470 0.4230 29 1 3.1293 -1.3809 0.5735 30 1 3.0067 -4.7637 -0.8771 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260066096.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:09 Heat of formation + Delta-G solvation = 0.469712 kcal Electronic energy + Delta-G solvation = -15617.308547 eV Core-core repulsion = 13083.131499 eV Total energy + Delta-G solvation = -2534.177048 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82429 -37.29938 -35.28852 -32.60905 -29.87620 -29.34344 -27.78767 -26.58597 -23.57880 -22.38613 -21.65463 -18.93468 -18.03576 -16.30828 -15.99937 -15.53189 -15.24394 -15.06541 -14.47455 -14.27720 -13.49101 -13.10685 -12.51186 -12.18868 -12.06419 -11.92937 -11.38684 -11.31728 -11.06417 -10.85243 -10.70060 -10.44378 -10.36427 -10.13947 -9.49342 -9.33390 -8.43029 -8.32888 -7.97014 -6.90355 -5.95400 -3.96599 1.26665 1.65549 2.07129 2.59919 3.02501 3.33100 3.39236 3.44437 3.80455 4.12071 4.51069 5.03380 5.16047 5.35264 5.38528 5.41623 5.50512 5.64842 5.72581 5.88200 5.98512 6.27787 6.39463 6.59324 6.67952 6.90892 6.96429 7.14099 7.63728 7.81750 7.94363 8.00462 8.40774 9.05510 9.64472 11.14618 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021303 B = 0.008968 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.038504 B = 3121.605251 C = 3958.127103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.273 6.273 3 C 0.190 3.810 4 C -0.239 4.239 5 C -0.067 4.067 6 C -0.137 4.137 7 C -0.099 4.099 8 S 0.035 5.965 9 C -0.231 4.231 10 C -0.018 4.018 11 C 0.068 3.932 12 C -0.494 4.494 13 H 0.052 0.948 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.090 4.090 21 H 0.051 0.949 22 H 0.100 0.900 23 H 0.049 0.951 24 H 0.128 0.872 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.162 0.838 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 12.192 2.430 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.183 6.183 3 C 0.141 3.859 4 C -0.261 4.261 5 C -0.088 4.088 6 C -0.161 4.161 7 C -0.215 4.215 8 S 0.298 5.702 9 C -0.363 4.363 10 C -0.028 4.028 11 C 0.029 3.971 12 C -0.532 4.532 13 H 0.071 0.929 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.099 4.099 21 H 0.069 0.931 22 H 0.118 0.882 23 H 0.067 0.933 24 H 0.146 0.854 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.179 0.821 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.939 12.725 2.467 13.106 hybrid contribution -1.559 -1.199 -1.069 2.238 sum -3.497 11.525 1.399 12.125 Atomic orbital electron populations 1.23065 0.79605 1.04010 1.00323 1.86511 1.20075 1.25241 1.86491 1.18950 0.90239 0.84849 0.91852 1.20900 0.99761 0.92136 1.13266 1.20623 0.93682 0.96722 0.97804 1.20190 0.93086 0.95735 1.07070 1.22465 0.97356 0.96057 1.05591 1.83593 1.00550 1.04894 1.81119 1.24546 1.00726 0.95435 1.15544 1.20490 0.90242 0.98496 0.93528 1.18177 0.97691 0.83090 0.98176 1.20898 1.45568 0.95234 0.91538 0.92941 1.24909 0.95689 0.96664 0.96799 1.69951 1.48232 1.04653 1.30646 0.86624 0.77973 0.78302 0.85307 1.20731 1.21257 1.19974 1.18652 0.91060 0.92225 1.08012 0.93070 0.88172 0.93279 0.85405 0.85756 0.86185 0.82080 0.95510 0.93675 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.80 101.05 0.99 1.37 16 2 O -0.27 -5.66 8.28 -19.34 -0.16 -5.82 16 3 C 0.19 3.76 6.75 -38.54 -0.26 3.50 16 4 C -0.24 -3.77 9.00 -39.60 -0.36 -4.12 16 5 C -0.07 -0.95 10.02 -39.67 -0.40 -1.35 16 6 C -0.14 -2.13 10.06 -39.23 -0.39 -2.52 16 7 C -0.10 -1.84 6.48 -38.43 -0.25 -2.09 16 8 S 0.04 0.61 23.23 -107.50 -2.50 -1.89 16 9 C -0.23 -4.71 10.74 28.84 0.31 -4.40 16 10 C -0.02 -0.42 5.16 -103.66 -0.53 -0.95 16 11 C 0.07 1.80 4.66 -29.04 -0.14 1.66 16 12 C -0.49 -14.05 9.09 -34.44 -0.31 -14.36 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.09 -1.93 6.02 -105.26 -0.63 -2.56 16 21 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 22 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 23 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 24 H 0.13 1.64 6.22 -52.49 -0.33 1.31 16 25 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.16 3.07 8.06 -52.49 -0.42 2.65 16 28 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.05 1.26 6.60 -51.92 -0.34 0.92 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 273.48 15.07 4.12 4.12 Total: -1.00 -31.25 273.48 -8.01 -39.26 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -3.12 Total: -2.54 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.07 Total: -24.22 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.16 Total: -5.82 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.50 Total: -1.89 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.25 -8.01 -39.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066096.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.727 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds