Wall clock time and date at job start Mon Mar 30 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35872 * 117.00307 * 2 1 4 4 C 1.37640 * 119.88093 * 359.97438 * 3 2 1 5 5 C 1.38769 * 120.38345 * 180.02562 * 4 3 2 6 6 C 1.37467 * 120.23831 * 359.95135 * 5 4 3 7 7 C 1.39917 * 120.43387 * 0.06686 * 6 5 4 8 8 S 1.75935 * 130.46029 * 179.97438 * 7 6 5 9 9 C 1.75303 * 92.19281 * 179.97438 * 8 7 6 10 10 C 1.31789 * 111.38950 * 0.26447 * 9 8 7 11 11 C 1.50702 * 122.55403 * 179.71006 * 10 9 8 12 12 C 1.50695 * 109.47343 * 265.02184 * 11 10 9 13 13 H 1.08005 * 119.99761 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00029 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00201 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00170 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46931 * 90.00441 * 16 14 12 18 18 H 1.48495 * 109.47584 * 210.00348 * 16 14 12 19 19 H 1.48498 * 109.47142 * 330.00607 * 16 14 12 20 20 C 1.39649 * 119.87393 * 359.95615 * 7 6 5 21 21 H 1.09000 * 109.46832 * 59.99908 * 1 2 3 22 22 H 1.08999 * 109.47051 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46881 * 299.99577 * 1 2 3 24 24 H 1.08000 * 119.80823 * 359.97438 * 4 3 2 25 25 H 1.07992 * 119.88115 * 179.97438 * 5 4 3 26 26 H 1.07998 * 119.78401 * 180.02562 * 6 5 4 27 27 H 1.08002 * 124.30165 * 179.97438 * 9 8 7 28 28 H 1.09000 * 109.46896 * 25.02798 * 11 10 9 29 29 H 1.09008 * 109.46737 * 145.02308 * 11 10 9 30 30 H 0.96992 * 120.00725 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2939 2.3634 -0.0005 5 6 1.9131 3.6053 -0.0011 6 6 3.2849 3.6949 -0.0001 7 6 4.0708 2.5373 0.0001 8 16 5.8195 2.3446 0.0007 9 6 5.6943 0.5960 0.0013 10 6 4.4360 0.2043 -0.0046 11 6 4.0394 -1.2496 -0.0120 12 6 3.7930 -1.6959 -1.4301 13 1 3.9122 -0.9968 -2.2447 14 6 3.4166 -2.9970 -1.6878 15 7 3.2719 -3.8485 -0.6959 16 14 3.1119 -3.5505 -3.4456 17 1 4.3774 -4.0635 -4.0295 18 1 2.0899 -4.6278 -3.4554 19 1 2.6263 -2.4003 -4.2496 20 6 3.4596 1.2817 0.0002 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2157 2.3011 -0.0014 25 1 1.3152 4.5046 -0.0019 26 1 3.7591 4.6652 -0.0001 27 1 6.5408 -0.0748 0.0013 28 1 4.8407 -1.8470 0.4230 29 1 3.1293 -1.3809 0.5735 30 1 3.0067 -4.7637 -0.8771 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260066096.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:09 Heat of formation + Delta-G solvation = -17.807371 kcal Electronic energy + Delta-G solvation = -15618.101100 eV Core-core repulsion = 13083.131499 eV Total energy + Delta-G solvation = -2534.969602 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16726 -38.70342 -36.83455 -34.69286 -31.35338 -30.72188 -29.55911 -27.91101 -25.52586 -23.85298 -23.01384 -20.48421 -19.40927 -18.47284 -17.42377 -16.90988 -16.60597 -16.55774 -16.22753 -15.57025 -14.95294 -14.68280 -14.20379 -13.92151 -13.65744 -13.29292 -13.07285 -12.93823 -12.63010 -12.44852 -12.38859 -11.91808 -11.86302 -11.77112 -11.36778 -11.30403 -10.54242 -9.89031 -9.35516 -8.35359 -8.08823 -6.24648 -0.11013 0.35309 0.70188 1.07016 1.35933 1.37931 1.46836 1.53371 2.42134 2.54821 2.79261 3.16111 3.74200 4.02001 4.10129 4.24573 4.42110 4.42585 4.50694 4.54744 4.74639 4.90660 4.94997 5.11800 5.30670 5.36688 5.46094 5.52054 5.75888 5.79560 5.90402 6.23318 6.62101 6.83074 7.40340 8.95206 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021303 B = 0.008968 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.038504 B = 3121.605251 C = 3958.127103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.320 6.320 3 C 0.157 3.843 4 C -0.228 4.228 5 C -0.052 4.052 6 C -0.136 4.136 7 C -0.117 4.117 8 S 0.097 5.903 9 C -0.242 4.242 10 C -0.052 4.052 11 C 0.082 3.918 12 C -0.505 4.505 13 H 0.041 0.959 14 C 0.010 3.990 15 N -0.928 5.928 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.271 1.271 20 C -0.134 4.134 21 H 0.069 0.931 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.159 0.841 25 H 0.175 0.825 26 H 0.155 0.845 27 H 0.163 0.837 28 H -0.002 1.002 29 H 0.018 0.982 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 15.081 1.515 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.232 6.232 3 C 0.109 3.891 4 C -0.249 4.249 5 C -0.072 4.072 6 C -0.159 4.159 7 C -0.232 4.232 8 S 0.361 5.639 9 C -0.375 4.375 10 C -0.063 4.063 11 C 0.043 3.957 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.188 4.188 15 N -0.568 5.568 16 Si 0.782 3.218 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.196 1.196 20 C -0.142 4.142 21 H 0.088 0.912 22 H 0.114 0.886 23 H 0.094 0.906 24 H 0.177 0.823 25 H 0.192 0.808 26 H 0.173 0.827 27 H 0.180 0.820 28 H 0.016 0.984 29 H 0.037 0.963 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.985 15.625 1.556 15.984 hybrid contribution -1.274 -1.993 -0.728 2.475 sum -4.259 13.632 0.828 14.306 Atomic orbital electron populations 1.23304 0.77294 1.04580 1.02467 1.86425 1.22802 1.26832 1.87141 1.19300 0.90206 0.85804 0.93803 1.21337 1.01180 0.91407 1.10948 1.21233 0.93605 0.97713 0.94693 1.20703 0.93719 0.95926 1.05579 1.22858 0.98153 0.96239 1.05982 1.83175 0.99750 1.00568 1.80439 1.24736 1.00022 0.98662 1.14054 1.20317 0.92127 0.97251 0.96566 1.17795 0.95348 0.85831 0.96757 1.21058 1.45735 0.95428 0.92114 0.94098 1.25747 0.95229 0.96615 1.01173 1.70073 1.48844 1.05038 1.32870 0.85568 0.78251 0.77963 0.79979 1.19855 1.20177 1.19577 1.18812 0.92043 0.92599 1.10769 0.91244 0.88614 0.90561 0.82328 0.80753 0.82721 0.81997 0.98421 0.96339 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.80 113.37 1.11 1.64 16 2 O -0.32 -13.74 8.28 -92.11 -0.76 -14.51 16 3 C 0.16 6.22 6.75 22.94 0.15 6.37 16 4 C -0.23 -6.49 9.00 22.26 0.20 -6.29 16 5 C -0.05 -1.21 10.02 22.21 0.22 -0.99 16 6 C -0.14 -3.66 10.06 22.49 0.23 -3.43 16 7 C -0.12 -4.17 6.48 23.02 0.15 -4.02 16 8 S 0.10 3.24 23.23 -56.49 -1.31 1.93 16 9 C -0.24 -10.25 10.74 67.06 0.72 -9.53 16 10 C -0.05 -2.54 5.16 -18.78 -0.10 -2.64 16 11 C 0.08 4.66 4.66 29.10 0.14 4.80 16 12 C -0.51 -30.14 9.09 25.60 0.23 -29.91 16 13 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 14 C 0.01 0.59 5.46 84.65 0.46 1.06 16 15 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 16 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 20 C -0.13 -5.81 6.02 -20.28 -0.12 -5.94 16 21 H 0.07 1.72 7.64 -2.39 -0.02 1.70 16 22 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 23 H 0.08 1.75 7.65 -2.39 -0.02 1.74 16 24 H 0.16 3.41 6.22 -2.91 -0.02 3.40 16 25 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 26 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.16 6.51 8.06 -2.91 -0.02 6.48 16 28 H 0.00 -0.15 8.09 -2.39 -0.02 -0.17 16 29 H 0.02 1.12 6.60 -2.38 -0.02 1.11 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -71.73 273.48 4.78 -66.95 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.15 Total: 3.46 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 3.40 Total: -48.88 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.76 Total: -14.51 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.31 Total: 1.93 kcal Total: -71.73 4.78 -66.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066096.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.142 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds