Wall clock time and date at job start Mon Mar 30 2020 06:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47288 * 275.41884 * 3 2 1 5 5 H 1.48501 * 109.47024 * 35.41551 * 3 2 1 6 6 H 1.48497 * 109.47248 * 155.41393 * 3 2 1 7 7 C 1.39939 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00413 * 341.71774 * 7 2 1 9 9 C 1.41403 * 119.99650 * 161.71656 * 7 2 1 10 10 C 1.40725 * 120.24439 * 330.24003 * 9 7 2 11 11 C 1.37607 * 119.74304 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24639 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50167 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.87152 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.30346 * 180.24770 * 14 13 12 16 16 C 1.52576 * 109.39213 * 60.49538 * 14 13 12 17 17 C 1.52576 * 110.72792 * 169.17497 * 16 14 13 18 18 C 1.53092 * 109.95812 * 70.67475 * 17 16 14 19 19 S 1.81747 * 108.83917 * 296.97564 * 18 17 16 20 20 C 1.53098 * 109.38926 * 299.99715 * 14 13 12 21 21 C 1.37636 * 120.24894 * 0.25244 * 13 12 11 22 22 H 0.96997 * 119.99840 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.13233 * 359.97438 * 10 9 7 24 24 H 1.07994 * 119.87539 * 179.97438 * 11 10 9 25 25 H 1.07996 * 119.74820 * 179.97438 * 12 11 10 26 26 H 1.09005 * 109.22898 * 289.49556 * 16 14 13 27 27 H 1.08998 * 109.22627 * 48.85127 * 16 14 13 28 28 H 1.09000 * 109.38971 * 310.52745 * 17 16 14 29 29 H 1.09000 * 109.31093 * 190.77742 * 17 16 14 30 30 H 1.09003 * 109.57910 * 177.17001 * 18 17 16 31 31 H 1.09001 * 109.68061 * 56.84859 * 18 17 16 32 32 H 1.08994 * 109.57926 * 302.97958 * 20 14 13 33 33 H 1.09000 * 109.57321 * 63.24498 * 20 14 13 34 34 H 1.08002 * 120.12704 * 179.74372 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5016 2.6170 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0079 -1.2119 -0.0005 8 1 1.5089 -2.1237 0.2924 9 6 3.3684 -1.2426 -0.3847 10 6 3.8633 -0.3103 -1.3154 11 6 5.1890 -0.3499 -1.6824 12 6 6.0359 -1.3040 -1.1392 13 6 5.5592 -2.2272 -0.2217 14 6 6.4920 -3.2584 0.3593 15 1 5.9404 -3.8936 1.0523 16 6 7.6220 -2.5559 1.1059 17 6 8.4308 -3.5561 1.9266 18 6 9.2515 -4.4530 0.9961 19 16 8.1143 -5.4143 -0.0459 20 6 7.0667 -4.1176 -0.7700 21 6 4.2359 -2.2092 0.1564 22 1 -0.4850 0.8400 0.0004 23 1 3.2052 0.4329 -1.7407 24 1 5.5710 0.3643 -2.3967 25 1 7.0748 -1.3280 -1.4332 26 1 8.2791 -2.0678 0.3860 27 1 7.1991 -1.8039 1.7720 28 1 7.7526 -4.1719 2.5173 29 1 9.1025 -3.0156 2.5935 30 1 9.8646 -5.1312 1.5897 31 1 9.8934 -3.8379 0.3654 32 1 6.2524 -4.5766 -1.3304 33 1 7.6626 -3.4938 -1.4364 34 1 3.8656 -2.9321 0.8683 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:20 Heat of formation + Delta-G solvation = -7.788059 kcal Electronic energy + Delta-G solvation = -15615.668702 eV Core-core repulsion = 13216.966665 eV Total energy + Delta-G solvation = -2398.702037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.60787 -36.37041 -33.65969 -32.18624 -30.27036 -28.72713 -27.07790 -25.13780 -23.20977 -21.34968 -20.82817 -19.54445 -17.24636 -16.42724 -15.82170 -15.07965 -14.76627 -14.47177 -13.89441 -13.63500 -13.38979 -13.06975 -12.94121 -12.67659 -12.43819 -11.92931 -11.53067 -11.30706 -11.25424 -11.07481 -10.85270 -10.58569 -10.46409 -10.22444 -9.76016 -9.64494 -9.48245 -9.12591 -7.76612 -7.64682 -7.48181 -6.96034 -4.50540 1.86015 2.47901 2.59492 2.71463 3.09567 3.20224 3.30179 3.96872 4.43687 4.72527 4.82943 4.96757 5.14119 5.28150 5.37421 5.45745 5.56051 5.70159 5.78549 5.90723 5.99977 6.04068 6.11226 6.21797 6.34565 6.43656 6.53062 6.74950 6.92337 7.15478 7.39935 7.60693 7.73865 7.85897 8.08953 8.34441 8.64182 8.79225 10.06636 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.041517 B = 0.005494 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.266322 B = 5095.152070 C = 5203.644741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.085 3.915 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.450 4.450 8 H 0.090 0.910 9 C 0.094 3.906 10 C -0.238 4.238 11 C -0.079 4.079 12 C -0.235 4.235 13 C -0.048 4.048 14 C -0.041 4.041 15 H 0.082 0.918 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.078 4.078 19 S -0.288 6.288 20 C -0.060 4.060 21 C -0.199 4.199 22 H 0.285 0.715 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.602 -3.404 1.683 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.134 4.134 3 Si 0.738 3.262 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.478 4.478 8 H 0.108 0.892 9 C 0.091 3.909 10 C -0.257 4.257 11 C -0.097 4.097 12 C -0.255 4.255 13 C -0.050 4.050 14 C -0.061 4.061 15 H 0.100 0.900 16 C -0.155 4.155 17 C -0.161 4.161 18 C -0.226 4.226 19 S -0.060 6.060 20 C -0.208 4.208 21 C -0.218 4.218 22 H 0.095 0.905 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.306 -4.465 1.539 14.119 hybrid contribution 0.203 2.109 0.035 2.119 sum 13.508 -2.357 1.574 13.803 Atomic orbital electron populations 1.69701 1.08094 1.30206 1.35380 1.26143 0.94681 1.01705 0.90866 0.86309 0.81265 0.79826 0.78754 1.19736 1.21899 1.16827 1.19484 0.93230 0.96097 1.39024 0.89208 1.17711 0.92950 0.90807 0.89470 1.21041 0.95646 1.04868 1.04181 1.20578 0.93869 0.97138 0.98160 1.20144 0.97987 1.01489 1.05867 1.19219 0.93612 0.95245 0.96946 1.20253 0.95260 0.95213 0.95404 0.89981 1.21553 0.96757 0.98016 0.99216 1.21754 0.98822 0.97718 0.97773 1.23404 0.98676 1.00887 0.99652 1.86757 1.41244 1.18577 1.59426 1.23570 1.00244 0.97114 0.99858 1.20906 0.92190 1.04051 1.04681 0.90491 0.88364 0.88988 0.89208 0.91883 0.90745 0.90625 0.91128 0.88317 0.90159 0.87730 0.89823 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.62 13.93 55.55 0.77 -20.85 16 2 C 0.08 2.22 5.40 -17.34 -0.09 2.13 16 3 Si 0.91 20.84 24.52 -169.99 -4.17 16.67 16 4 H -0.27 -6.03 6.71 56.52 0.38 -5.65 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.25 -5.74 6.86 56.52 0.39 -5.35 16 7 C -0.45 -12.14 9.57 -37.74 -0.36 -12.50 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 9 C 0.09 2.35 5.11 -106.82 -0.55 1.80 16 10 C -0.24 -5.70 7.18 -38.87 -0.28 -5.98 16 11 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16 12 C -0.24 -4.64 8.84 -39.29 -0.35 -4.99 16 13 C -0.05 -0.95 4.72 -104.70 -0.49 -1.44 16 14 C -0.04 -0.65 2.20 -91.94 -0.20 -0.85 16 15 H 0.08 1.33 7.77 -51.93 -0.40 0.92 16 16 C -0.12 -1.60 4.60 -27.17 -0.13 -1.73 16 17 C -0.12 -1.35 5.75 -26.90 -0.15 -1.51 16 18 C -0.08 -0.84 6.45 37.21 0.24 -0.60 16 19 S -0.29 -3.88 22.33 -107.50 -2.40 -6.28 16 20 C -0.06 -0.87 5.49 37.21 0.20 -0.67 16 21 C -0.20 -4.50 9.41 -38.87 -0.37 -4.86 16 22 H 0.28 6.88 8.30 -40.82 -0.34 6.55 16 23 H 0.10 2.37 4.73 -52.49 -0.25 2.12 16 24 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 25 H 0.09 1.56 7.28 -52.49 -0.38 1.18 16 26 H 0.06 0.84 7.70 -51.93 -0.40 0.44 16 27 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 28 H 0.08 0.87 8.06 -51.93 -0.42 0.46 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.18 7.49 -51.93 -0.39 0.80 16 34 H 0.10 2.17 7.93 -52.49 -0.42 1.76 16 LS Contribution 282.23 15.07 4.25 4.25 Total: -1.00 -26.68 282.23 -9.25 -35.93 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.78 Total: 3.57 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: -2.92 Total: -33.29 kcal Atomic # 7 Polarization: -21.62 SS G_CDS: 0.77 Total: -20.85 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.17 Total: 16.67 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -2.40 Total: -6.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.68 -9.25 -35.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.139 kcal (2) G-P(sol) polarization free energy of solvation -26.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds