Wall clock time and date at job start Mon Mar 30 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31855 * 122.55406 * 2 1 4 4 S 1.75310 * 111.36925 * 179.85961 * 3 2 1 5 5 C 1.75900 * 92.18229 * 0.34674 * 4 3 2 6 6 C 1.39607 * 109.71296 * 359.81169 * 5 4 3 7 7 C 1.41281 * 118.86223 * 180.02562 * 6 5 4 8 8 C 1.36093 * 120.55927 * 359.97438 * 7 6 5 9 9 C 1.38791 * 120.63361 * 0.02562 * 8 7 6 10 10 C 1.37958 * 120.12238 * 359.97438 * 9 8 7 11 11 O 1.35946 * 119.96011 * 180.02562 * 10 9 8 12 12 C 1.42904 * 117.00118 * 0.02562 * 11 10 9 13 13 C 1.50696 * 109.47390 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00063 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00229 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99544 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00276 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46902 * 90.00090 * 17 15 13 19 19 H 1.48498 * 109.47440 * 210.00167 * 17 15 13 20 20 H 1.48498 * 109.46898 * 330.00855 * 17 15 13 21 21 H 1.09002 * 109.47152 * 269.71008 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71108 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71089 * 1 2 3 24 24 H 1.07995 * 124.31185 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.72056 * 180.02562 * 7 6 5 26 26 H 1.07998 * 119.68294 * 180.02562 * 8 7 6 27 27 H 1.08002 * 119.94118 * 180.02562 * 9 8 7 28 28 H 1.08995 * 109.47116 * 299.99882 * 12 11 10 29 29 H 1.09011 * 109.46694 * 59.99653 * 12 11 10 30 30 H 0.97007 * 119.99589 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1114 0.0000 4 16 3.9363 0.7713 0.0040 5 6 3.6611 -0.9660 -0.0049 6 6 2.2894 -1.2254 -0.0062 7 6 1.8492 -2.5679 -0.0126 8 6 2.7473 -3.5905 -0.0178 9 6 4.1113 -3.3339 -0.0165 10 6 4.5710 -2.0332 -0.0104 11 8 5.9077 -1.7856 -0.0097 12 6 6.7776 -2.9194 -0.0160 13 6 8.2106 -2.4531 -0.0148 14 1 8.4348 -1.3967 -0.0093 15 6 9.2356 -3.3753 -0.0197 16 7 8.9626 -4.6618 -0.0259 17 14 11.0120 -2.7974 -0.0175 18 1 11.4831 -2.6512 1.3832 19 1 11.8576 -3.7938 -0.7227 20 1 11.1072 -1.4878 -0.7110 21 1 -0.3633 -0.0052 1.0277 22 1 -0.3633 -0.8874 -0.5183 23 1 -0.3633 0.8926 -0.5094 24 1 1.7922 2.1045 -0.0004 25 1 0.7912 -2.7845 -0.0141 26 1 2.3952 -4.6115 -0.0231 27 1 4.8141 -4.1539 -0.0212 28 1 6.5914 -3.5250 0.8708 29 1 6.5905 -3.5157 -0.9092 30 1 9.6838 -5.3106 -0.0298 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260142167.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:03 Heat of formation + Delta-G solvation = -8.145866 kcal Electronic energy + Delta-G solvation = -14962.605051 eV Core-core repulsion = 12428.054403 eV Total energy + Delta-G solvation = -2534.550647 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67396 -37.60351 -35.03896 -32.95284 -30.56190 -29.11351 -28.01763 -27.15190 -23.68135 -22.35620 -21.68372 -19.21108 -18.10243 -16.52881 -16.13828 -15.48881 -14.88086 -14.82792 -14.67226 -14.27073 -13.81621 -13.59138 -12.74567 -12.51993 -12.43336 -12.11746 -11.74311 -11.27308 -11.12713 -10.97720 -10.97078 -10.77435 -10.31409 -10.24718 -10.21354 -9.32071 -8.77433 -8.45961 -8.21227 -6.99172 -6.27451 -4.31222 1.01276 1.69726 1.87311 2.36401 2.52465 3.23188 3.28347 3.33348 4.05822 4.07894 4.41078 4.75512 5.10030 5.12483 5.28537 5.36040 5.40276 5.55059 5.62534 5.67762 5.85006 6.01357 6.23409 6.31301 6.52664 6.70128 6.83562 6.86936 7.09593 7.15117 7.64464 7.90884 8.36688 8.80110 9.34033 10.83794 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.037913 B = 0.005480 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.348691 B = 5108.432167 C = 5826.333500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.095 4.095 3 C -0.207 4.207 4 S 0.104 5.896 5 C -0.174 4.174 6 C -0.040 4.040 7 C -0.143 4.143 8 C -0.071 4.071 9 C -0.212 4.212 10 C 0.189 3.811 11 O -0.313 6.313 12 C 0.193 3.807 13 C -0.525 4.525 14 H 0.071 0.929 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.914 3.086 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.270 1.270 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.162 0.838 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.141 0.859 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 6.322 0.044 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.341 4.341 4 S 0.371 5.629 5 C -0.289 4.289 6 C -0.048 4.048 7 C -0.163 4.163 8 C -0.091 4.091 9 C -0.234 4.234 10 C 0.137 3.863 11 O -0.225 6.225 12 C 0.120 3.880 13 C -0.562 4.562 14 H 0.089 0.911 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.740 3.260 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.180 0.820 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.158 0.842 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.559 7.334 0.046 15.415 hybrid contribution -0.220 -1.028 0.009 1.052 sum -13.779 6.306 0.055 15.153 Atomic orbital electron populations 1.20481 0.89826 1.02582 1.02168 1.19620 0.96590 0.90756 1.03897 1.24987 0.97802 1.01859 1.09419 1.84287 1.02738 0.97641 1.78274 1.21902 0.95384 0.96683 1.14973 1.18905 0.90153 0.93802 1.01972 1.20366 0.99250 0.90112 1.06606 1.20440 0.92430 0.98812 0.97394 1.21280 0.96921 0.95663 1.09567 1.18403 0.84623 0.91078 0.92154 1.86142 1.11434 1.39451 1.85499 1.20716 0.87524 0.82649 0.97081 1.20957 0.88512 0.94404 1.52376 0.91115 1.24924 0.99987 0.94588 0.94589 1.69947 1.33287 1.00516 1.49475 0.86238 0.82676 0.78654 0.78418 1.20244 1.20865 1.19450 0.91271 0.91414 0.91613 0.82035 0.86256 0.85791 0.84176 0.95821 0.95813 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.04 36.01 0.36 -0.53 16 2 C -0.10 -1.31 5.97 -103.68 -0.62 -1.93 16 3 C -0.21 -2.77 10.76 28.83 0.31 -2.46 16 4 S 0.10 1.75 23.22 -107.50 -2.50 -0.74 16 5 C -0.17 -3.35 6.43 -38.32 -0.25 -3.60 16 6 C -0.04 -0.66 6.01 -105.39 -0.63 -1.30 16 7 C -0.14 -2.13 9.73 -39.20 -0.38 -2.51 16 8 C -0.07 -1.11 9.94 -40.15 -0.40 -1.51 16 9 C -0.21 -4.09 9.03 -39.48 -0.36 -4.45 16 10 C 0.19 4.07 6.72 -38.93 -0.26 3.81 16 11 O -0.31 -7.78 10.11 -19.57 -0.20 -7.98 16 12 C 0.19 5.15 4.49 36.00 0.16 5.31 16 13 C -0.52 -15.05 9.43 -34.44 -0.32 -15.37 16 14 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 17 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.61 7.59 -51.93 -0.39 0.22 16 23 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 24 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.12 1.39 7.64 -52.49 -0.40 0.99 16 26 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.14 2.78 6.26 -52.49 -0.33 2.45 16 28 H 0.02 0.65 7.65 -51.93 -0.40 0.26 16 29 H 0.02 0.65 7.65 -51.92 -0.40 0.26 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 276.76 15.07 4.17 4.17 Total: -1.00 -30.30 276.76 -8.45 -38.75 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -3.15 Total: -2.52 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -2.49 Total: -22.91 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.74 Total: -25.07 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.20 Total: -7.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.50 Total: -0.74 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.30 -8.45 -38.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142167.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.600 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds