Wall clock time and date at job start Mon Mar 30 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31855 * 122.55406 * 2 1 4 4 S 1.75310 * 111.36925 * 179.85961 * 3 2 1 5 5 C 1.75900 * 92.18229 * 0.34674 * 4 3 2 6 6 C 1.39607 * 109.71296 * 359.81169 * 5 4 3 7 7 C 1.41281 * 118.86223 * 180.02562 * 6 5 4 8 8 C 1.36093 * 120.55927 * 359.97438 * 7 6 5 9 9 C 1.38791 * 120.63361 * 0.02562 * 8 7 6 10 10 C 1.37958 * 120.12238 * 359.97438 * 9 8 7 11 11 O 1.35946 * 119.96011 * 180.02562 * 10 9 8 12 12 C 1.42904 * 117.00118 * 0.02562 * 11 10 9 13 13 C 1.50696 * 109.47390 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00063 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00229 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99544 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00276 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46902 * 90.00090 * 17 15 13 19 19 H 1.48498 * 109.47440 * 210.00167 * 17 15 13 20 20 H 1.48498 * 109.46898 * 330.00855 * 17 15 13 21 21 H 1.09002 * 109.47152 * 269.71008 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71108 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71089 * 1 2 3 24 24 H 1.07995 * 124.31185 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.72056 * 180.02562 * 7 6 5 26 26 H 1.07998 * 119.68294 * 180.02562 * 8 7 6 27 27 H 1.08002 * 119.94118 * 180.02562 * 9 8 7 28 28 H 1.08995 * 109.47116 * 299.99882 * 12 11 10 29 29 H 1.09011 * 109.46694 * 59.99653 * 12 11 10 30 30 H 0.97007 * 119.99589 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1114 0.0000 4 16 3.9363 0.7713 0.0040 5 6 3.6611 -0.9660 -0.0049 6 6 2.2894 -1.2254 -0.0062 7 6 1.8492 -2.5679 -0.0126 8 6 2.7473 -3.5905 -0.0178 9 6 4.1113 -3.3339 -0.0165 10 6 4.5710 -2.0332 -0.0104 11 8 5.9077 -1.7856 -0.0097 12 6 6.7776 -2.9194 -0.0160 13 6 8.2106 -2.4531 -0.0148 14 1 8.4348 -1.3967 -0.0093 15 6 9.2356 -3.3753 -0.0197 16 7 8.9626 -4.6618 -0.0259 17 14 11.0120 -2.7974 -0.0175 18 1 11.4831 -2.6512 1.3832 19 1 11.8576 -3.7938 -0.7227 20 1 11.1072 -1.4878 -0.7110 21 1 -0.3633 -0.0052 1.0277 22 1 -0.3633 -0.8874 -0.5183 23 1 -0.3633 0.8926 -0.5094 24 1 1.7922 2.1045 -0.0004 25 1 0.7912 -2.7845 -0.0141 26 1 2.3952 -4.6115 -0.0231 27 1 4.8141 -4.1539 -0.0212 28 1 6.5914 -3.5250 0.8708 29 1 6.5905 -3.5157 -0.9092 30 1 9.6838 -5.3106 -0.0298 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260142167.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:03 Heat of formation + Delta-G solvation = -25.572593 kcal Electronic energy + Delta-G solvation = -14963.360730 eV Core-core repulsion = 12428.054403 eV Total energy + Delta-G solvation = -2535.306327 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13528 -39.14690 -36.32378 -35.08823 -31.90685 -30.52682 -29.67579 -28.45101 -25.51658 -23.82304 -23.14314 -20.49993 -19.59988 -18.53290 -17.70219 -16.93296 -16.64675 -16.55888 -16.16981 -15.59448 -14.96604 -14.92021 -14.26659 -13.79543 -13.67157 -13.55340 -13.09752 -12.94686 -12.91074 -12.45437 -12.35963 -12.25405 -12.08974 -11.80691 -11.60855 -11.37318 -10.77117 -9.96805 -9.56937 -8.43252 -8.38744 -6.57869 -0.26460 0.32411 0.59105 1.16065 1.30983 1.36699 1.39554 1.51586 2.22467 2.60335 2.71700 2.91467 3.61186 3.97560 4.01394 4.12507 4.31830 4.44625 4.61135 4.67039 4.70203 4.90597 4.91453 4.97581 5.08992 5.21881 5.31036 5.45670 5.49304 5.59684 5.76961 5.85266 6.42111 6.68422 7.13885 8.69058 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.037913 B = 0.005480 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.348691 B = 5108.432167 C = 5826.333500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.096 4.096 3 C -0.190 4.190 4 S 0.056 5.944 5 C -0.200 4.200 6 C -0.047 4.047 7 C -0.122 4.122 8 C -0.072 4.072 9 C -0.224 4.224 10 C 0.140 3.860 11 O -0.337 6.337 12 C 0.213 3.787 13 C -0.560 4.560 14 H 0.063 0.937 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.987 3.013 18 H -0.266 1.266 19 H -0.270 1.270 20 H -0.265 1.265 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.201 0.799 25 H 0.167 0.833 26 H 0.161 0.839 27 H 0.121 0.879 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.485 7.046 0.052 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.323 4.323 4 S 0.321 5.679 5 C -0.315 4.315 6 C -0.056 4.056 7 C -0.142 4.142 8 C -0.091 4.091 9 C -0.246 4.246 10 C 0.090 3.910 11 O -0.250 6.250 12 C 0.140 3.860 13 C -0.597 4.597 14 H 0.081 0.919 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.809 3.191 18 H -0.191 1.191 19 H -0.194 1.194 20 H -0.190 1.190 21 H 0.103 0.897 22 H 0.098 0.902 23 H 0.106 0.894 24 H 0.218 0.782 25 H 0.184 0.816 26 H 0.179 0.821 27 H 0.139 0.861 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.999 8.053 0.055 17.912 hybrid contribution 0.310 -1.249 0.007 1.287 sum -15.689 6.805 0.062 17.101 Atomic orbital electron populations 1.20610 0.86125 1.04349 1.03658 1.20029 0.98802 0.89173 1.02771 1.25347 0.94725 1.03777 1.08496 1.84382 1.07161 0.97065 1.79259 1.22180 0.96406 0.97086 1.15824 1.19520 0.89276 0.95886 1.00888 1.20916 1.01335 0.88931 1.03030 1.20821 0.90589 1.01210 0.96525 1.21354 0.98749 0.94343 1.10108 1.18823 0.83388 0.93058 0.95705 1.86057 1.13434 1.38395 1.87162 1.20228 0.87716 0.82957 0.95104 1.21273 0.89985 0.94412 1.54042 0.91897 1.25932 1.04740 0.94524 0.93276 1.70045 1.35134 1.01683 1.49254 0.85122 0.76467 0.78454 0.79033 1.19058 1.19416 1.18975 0.89726 0.90249 0.89395 0.78171 0.81588 0.82105 0.86136 0.97794 0.97792 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 10.04 71.24 0.71 -0.53 16 2 C -0.10 -2.29 5.97 -18.83 -0.11 -2.41 16 3 C -0.19 -4.60 10.76 67.01 0.72 -3.88 16 4 S 0.06 1.92 23.22 -56.49 -1.31 0.61 16 5 C -0.20 -7.89 6.43 23.09 0.15 -7.74 16 6 C -0.05 -1.46 6.01 -20.36 -0.12 -1.58 16 7 C -0.12 -3.26 9.73 22.52 0.22 -3.04 16 8 C -0.07 -2.15 9.94 21.90 0.22 -1.93 16 9 C -0.22 -9.07 9.03 22.34 0.20 -8.87 16 10 C 0.14 6.42 6.72 22.69 0.15 6.57 16 11 O -0.34 -18.16 10.11 -92.94 -0.94 -19.10 16 12 C 0.21 12.31 4.49 71.23 0.32 12.63 16 13 C -0.56 -33.82 9.43 25.60 0.24 -33.58 16 14 H 0.06 3.79 7.81 -2.91 -0.02 3.76 16 15 C 0.02 0.87 5.46 84.66 0.46 1.33 16 16 N -0.92 -54.76 13.29 21.45 0.28 -54.47 16 17 Si 0.99 44.25 29.54 68.60 2.03 46.28 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.08 0.97 7.59 -2.39 -0.02 0.95 16 23 H 0.09 0.90 8.11 -2.38 -0.02 0.88 16 24 H 0.20 3.20 8.06 -2.91 -0.02 3.17 16 25 H 0.17 2.90 7.64 -2.91 -0.02 2.88 16 26 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 27 H 0.12 5.23 6.26 -2.91 -0.02 5.21 16 28 H 0.00 0.26 7.65 -2.39 -0.02 0.24 16 29 H 0.00 0.26 7.65 -2.38 -0.02 0.24 16 30 H 0.28 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -70.28 276.76 4.37 -65.91 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.15 Total: 3.79 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 3.16 Total: -43.02 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.28 Total: -54.47 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.94 Total: -19.10 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.31 Total: 0.61 kcal Total: -70.28 4.37 -65.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142167.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.338 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds