Wall clock time and date at job start Mon Mar 30 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.47264 * 2 1 4 4 C 1.50698 * 109.46922 * 120.00096 * 2 1 3 5 5 H 1.07991 * 120.00133 * 119.99708 * 4 2 1 6 6 C 1.37879 * 119.99841 * 300.00147 * 4 2 1 7 7 N 1.31517 * 120.00009 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00144 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46929 * 90.00543 * 8 6 4 10 10 H 1.48497 * 109.47258 * 210.00682 * 8 6 4 11 11 H 1.48506 * 109.46977 * 330.00608 * 8 6 4 12 12 C 1.50701 * 109.46851 * 239.99503 * 2 1 3 13 13 C 1.31781 * 122.55963 * 299.98259 * 12 2 1 14 14 S 1.75303 * 111.38308 * 180.02562 * 13 12 2 15 15 C 1.75937 * 92.19030 * 359.97438 * 14 13 12 16 16 C 1.39958 * 130.46197 * 180.02562 * 15 14 13 17 17 C 1.37417 * 120.43623 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.24337 * 359.97438 * 17 16 15 19 19 C 1.37599 * 120.37208 * 359.97438 * 18 17 16 20 20 O 1.35884 * 119.87431 * 179.97438 * 19 18 17 21 21 C 1.39600 * 109.66761 * 359.97438 * 15 14 13 22 22 H 1.09001 * 109.47264 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47318 * 300.00433 * 1 2 3 24 24 H 1.09010 * 109.46708 * 59.99957 * 1 2 3 25 25 H 0.96997 * 120.00284 * 179.97438 * 7 6 4 26 26 H 1.07995 * 124.30868 * 0.03593 * 13 12 2 27 27 H 1.08007 * 119.78036 * 359.97438 * 16 15 14 28 28 H 1.08003 * 119.88143 * 180.28052 * 17 16 15 29 29 H 1.08002 * 119.81076 * 179.97438 * 18 17 16 30 30 H 0.96704 * 113.99887 * 90.00241 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8591 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9772 1.9954 3.9069 11 1 0.8491 2.1773 1.4922 12 6 2.0323 -0.7105 -1.2304 13 6 1.7454 -1.9705 -1.4886 14 16 2.4793 -2.4984 -2.9905 15 6 3.2061 -0.9205 -3.2685 16 6 4.0102 -0.4632 -4.3188 17 6 4.4724 0.8309 -4.3291 18 6 4.1450 1.6985 -3.2961 19 6 3.3551 1.2720 -2.2533 20 8 3.0413 2.1297 -1.2472 21 6 2.8697 -0.0577 -2.2238 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.9039 -0.5275 4.4375 26 1 1.1356 -2.5980 -0.8555 27 1 4.2691 -1.1318 -5.1265 28 1 5.0886 1.1757 -5.1463 29 1 4.5125 2.7140 -3.3111 30 1 2.2293 2.6327 -1.3980 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260144755.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:05 Heat of formation + Delta-G solvation = -20.190021 kcal Electronic energy + Delta-G solvation = -15703.007862 eV Core-core repulsion = 13167.934941 eV Total energy + Delta-G solvation = -2535.072921 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00769 -37.99898 -37.46350 -34.84363 -32.82103 -30.76185 -29.67737 -27.11322 -25.30569 -23.54029 -23.01807 -20.29606 -19.57844 -18.78804 -17.71828 -17.09950 -16.57497 -16.37263 -15.92076 -15.33936 -14.98178 -14.72024 -14.30227 -14.05805 -13.78796 -13.28304 -13.12463 -13.05385 -12.79585 -12.38555 -12.05720 -11.88713 -11.62728 -11.44501 -11.21210 -10.95191 -10.68219 -10.20093 -9.44660 -8.45361 -8.28113 -6.31930 -0.18695 0.19830 0.66823 1.05900 1.30661 1.37536 1.46165 1.48676 2.34087 2.65022 3.07218 3.31852 3.71935 3.98719 4.08123 4.39320 4.42298 4.58398 4.64070 4.76559 4.80105 4.93610 5.01814 5.11817 5.28628 5.39937 5.41689 5.46034 5.66539 5.83468 5.90260 6.30425 6.72482 6.84630 7.31221 8.88620 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.008653 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.709156 B = 3234.947717 C = 3857.538327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 H 0.063 0.937 4 C -0.506 4.506 5 H 0.023 0.977 6 C 0.008 3.992 7 N -0.954 5.954 8 Si 0.954 3.046 9 H -0.267 1.267 10 H -0.302 1.302 11 H -0.236 1.236 12 C -0.052 4.052 13 C -0.216 4.216 14 S 0.083 5.917 15 C -0.139 4.139 16 C -0.101 4.101 17 C -0.078 4.078 18 C -0.149 4.149 19 C 0.131 3.869 20 O -0.502 6.502 21 C -0.126 4.126 22 H 0.047 0.953 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.265 0.735 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.176 0.824 29 H 0.158 0.842 30 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 5.548 -18.576 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 H 0.081 0.919 4 C -0.544 4.544 5 H 0.041 0.959 6 C -0.188 4.188 7 N -0.595 5.595 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.230 1.230 11 H -0.159 1.159 12 C -0.062 4.062 13 C -0.349 4.349 14 S 0.347 5.653 15 C -0.255 4.255 16 C -0.123 4.123 17 C -0.099 4.099 18 C -0.170 4.170 19 C 0.085 3.915 20 O -0.315 6.315 21 C -0.135 4.135 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.172 0.828 27 H 0.172 0.828 28 H 0.194 0.806 29 H 0.176 0.824 30 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.802 3.879 -18.879 19.290 hybrid contribution -0.893 1.412 1.817 2.468 sum -0.091 5.290 -17.062 17.863 Atomic orbital electron populations 1.22106 0.96770 1.01123 0.99738 1.18210 0.92809 0.97295 0.89012 0.91925 1.21198 1.30737 1.11920 0.90568 0.95887 1.25920 0.97506 1.00269 0.95141 1.70061 1.48001 1.42814 0.98590 0.85765 0.78653 0.79901 0.77609 1.19271 1.23017 1.15923 1.19993 0.96431 0.94178 0.95607 1.24760 1.08983 0.99374 1.01758 1.83395 1.51597 1.10651 1.19628 1.22918 1.05015 0.97673 0.99862 1.20853 0.97211 0.97481 0.96801 1.21337 0.98310 0.91736 0.98498 1.21512 1.00049 1.02460 0.92957 1.18649 0.97216 0.87188 0.88490 1.84841 1.48046 1.56013 1.42551 1.19815 1.01992 0.96145 0.95529 0.93339 0.94471 0.91941 0.92637 0.82782 0.82751 0.80650 0.82394 0.73796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.85 8.50 71.98 0.61 -5.24 16 2 C 0.05 2.27 2.13 -12.28 -0.03 2.24 16 3 H 0.06 2.94 4.29 -2.39 -0.01 2.93 16 4 C -0.51 -29.90 8.88 25.60 0.23 -29.67 16 5 H 0.02 1.53 7.87 -2.92 -0.02 1.51 16 6 C 0.01 0.46 5.45 84.65 0.46 0.93 16 7 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 8 Si 0.95 45.35 24.37 68.60 1.67 47.02 16 9 H -0.27 -11.97 6.87 99.48 0.68 -11.28 16 10 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 11 H -0.24 -10.03 6.53 99.48 0.65 -9.38 16 12 C -0.05 -2.23 4.80 -18.77 -0.09 -2.32 16 13 C -0.22 -8.79 9.82 67.07 0.66 -8.13 16 14 S 0.08 2.68 23.24 -56.49 -1.31 1.37 16 15 C -0.14 -4.52 6.48 23.02 0.15 -4.37 16 16 C -0.10 -2.40 10.06 22.49 0.23 -2.17 16 17 C -0.08 -1.56 10.02 22.21 0.22 -1.33 16 18 C -0.15 -3.60 9.93 22.26 0.22 -3.38 16 19 C 0.13 4.32 6.76 22.94 0.16 4.48 16 20 O -0.50 -16.88 10.86 -92.24 -1.00 -17.89 16 21 C -0.13 -4.78 6.02 -20.28 -0.12 -4.90 16 22 H 0.05 2.01 7.70 -2.39 -0.02 2.00 16 23 H 0.04 1.57 3.27 -2.39 -0.01 1.57 16 24 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 26 H 0.15 6.42 7.88 -2.91 -0.02 6.40 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.40 9.73 8.99 -74.05 -0.67 9.06 16 Total: -1.00 -73.57 262.41 2.78 -70.78 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.43 Total: 13.77 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 2.69 Total: -53.88 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.30 Total: -61.18 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -1.00 Total: -17.89 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.67 Total: 47.02 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.31 Total: 1.37 kcal Total: -73.57 2.78 -70.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144755.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.593 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds