Wall clock time and date at job start Mon Mar 30 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39877 * 125.89518 * 2 1 4 4 C 1.35318 * 107.91888 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.12861 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47093 * 155.02236 * 5 4 3 7 7 C 1.50700 * 109.46996 * 35.01840 * 5 4 3 8 8 H 1.08000 * 119.99620 * 271.44557 * 7 5 4 9 9 C 1.37875 * 119.99910 * 91.44900 * 7 5 4 10 10 N 1.31511 * 119.99927 * 187.65153 * 9 7 5 11 11 Si 1.86800 * 120.00082 * 7.64443 * 9 7 5 12 12 H 1.48502 * 109.47349 * 274.84885 * 11 9 7 13 13 H 1.48504 * 109.46801 * 154.85261 * 11 9 7 14 14 H 1.48498 * 109.47101 * 34.85493 * 11 9 7 15 15 C 1.53004 * 109.46788 * 275.02162 * 5 4 3 16 16 F 1.39893 * 109.46858 * 181.26862 * 15 5 4 17 17 F 1.39897 * 109.46853 * 301.26271 * 15 5 4 18 18 F 1.39893 * 109.47065 * 61.26172 * 15 5 4 19 19 N 1.34952 * 107.74559 * 0.22166 * 4 3 2 20 20 C 1.46498 * 126.03598 * 179.77726 * 19 4 3 21 21 N 1.30828 * 125.89974 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47453 * 90.00320 * 1 2 3 23 23 H 1.09005 * 109.47418 * 210.00527 * 1 2 3 24 24 H 1.08999 * 109.47451 * 330.00450 * 1 2 3 25 25 H 1.08003 * 126.04167 * 0.05150 * 3 2 1 26 26 H 0.97002 * 120.00403 * 179.97438 * 10 9 7 27 27 H 1.08998 * 109.47605 * 90.00297 * 20 19 4 28 28 H 1.09005 * 109.46973 * 210.00001 * 20 19 4 29 29 H 1.08996 * 109.47282 * 329.99960 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0006 5 6 4.8350 1.5991 -0.0013 6 1 5.6757 1.0575 0.4323 7 6 4.5601 2.8363 0.8139 8 1 4.1248 3.7063 0.3449 9 6 4.8643 2.8576 2.1585 10 7 4.4891 3.8757 2.9016 11 14 5.8093 1.4401 2.9249 12 1 4.8619 0.3616 3.3050 13 1 6.5252 1.9192 4.1346 14 1 6.7921 0.9129 1.9444 15 6 5.1733 2.0001 -1.4386 16 9 6.3234 2.7966 -1.4420 17 9 5.4003 0.8502 -2.2024 18 9 4.1058 2.7200 -1.9854 19 7 3.6088 -0.6340 -0.0059 20 6 4.7899 -1.5006 -0.0129 21 7 2.2741 -1.0598 -0.0005 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.9922 2.1599 0.0008 26 1 4.7028 3.8906 3.8477 27 1 5.0860 -1.7196 1.0129 28 1 4.5548 -2.4311 -0.5298 29 1 5.6077 -0.9959 -0.5273 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149975.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:33 Heat of formation + Delta-G solvation = -87.511697 kcal Electronic energy + Delta-G solvation = -19100.872357 eV Core-core repulsion = 15610.563289 eV Total energy + Delta-G solvation = -3490.309068 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.24162 -46.79736 -46.64265 -40.56271 -34.38368 -33.23405 -31.53826 -29.21282 -27.89004 -25.12232 -24.77491 -22.17179 -19.72779 -18.90251 -17.96292 -17.57240 -16.69252 -16.58746 -15.79227 -14.83630 -14.35741 -13.78695 -13.68359 -13.42841 -13.19789 -13.14922 -13.01015 -12.89785 -12.86804 -12.68914 -12.40039 -11.96107 -11.82298 -11.71936 -11.42726 -11.02801 -10.61852 -10.21141 -9.98448 -9.70636 -8.92221 -8.44020 -7.72741 -6.44277 -4.50999 2.45753 3.02795 3.06105 3.12134 3.14543 3.42202 3.79809 4.09119 4.66851 4.88800 4.98526 5.05064 5.18410 5.47034 5.49262 5.55538 5.68514 5.85172 5.96424 6.00973 6.16321 6.49611 6.60989 6.90251 7.12766 7.41709 7.68490 8.02639 8.39205 8.60354 9.10934 10.66180 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.012934 C = 0.010429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.126030 B = 2164.241370 C = 2684.105400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.058 3.942 3 C -0.230 4.230 4 C 0.095 3.905 5 C 0.034 3.966 6 H 0.081 0.919 7 C -0.515 4.515 8 H 0.096 0.904 9 C 0.096 3.904 10 N -0.867 5.867 11 Si 0.861 3.139 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.262 1.262 15 C 0.458 3.542 16 F -0.181 7.181 17 F -0.207 7.207 18 F -0.181 7.181 19 N -0.380 5.380 20 C 0.101 3.899 21 N -0.314 5.314 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.150 0.850 26 H 0.273 0.727 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 -6.922 -5.024 8.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C -0.258 4.258 4 C -0.031 4.031 5 C 0.012 3.988 6 H 0.099 0.901 7 C -0.552 4.552 8 H 0.114 0.886 9 C -0.112 4.112 10 N -0.500 5.500 11 Si 0.687 3.313 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.187 1.187 15 C 0.403 3.597 16 F -0.163 7.163 17 F -0.188 7.188 18 F -0.162 7.162 19 N -0.163 5.163 20 C -0.041 4.041 21 N -0.137 5.137 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.167 0.833 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.326 -8.173 -4.844 9.506 hybrid contribution 0.685 0.188 0.396 0.813 sum 0.359 -7.984 -4.448 9.147 Atomic orbital electron populations 1.20076 0.87323 1.02727 1.02226 1.22245 0.96522 0.91326 1.00657 1.21052 0.90626 0.99539 1.14624 1.21791 0.98312 0.82903 1.00102 1.19045 0.93123 0.97685 0.88959 0.90103 1.20399 1.44495 0.96580 0.93770 0.88628 1.24872 0.94233 0.95548 0.96500 1.69835 1.43015 1.30176 1.06999 0.87044 0.81106 0.83365 0.79804 1.19401 1.20162 1.18676 1.20973 0.74161 0.74137 0.90387 1.93115 1.51174 1.74970 1.96993 1.93075 1.94825 1.51324 1.79605 1.93110 1.56570 1.78820 1.87722 1.48332 1.04938 1.04502 1.58528 1.21749 0.84817 0.94899 1.02639 1.77078 0.86480 1.22944 1.27205 0.91153 0.91660 0.90591 0.83276 0.91701 0.91592 0.89609 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.45 36.00 0.38 -0.57 15 2 C 0.06 1.14 7.22 -82.41 -0.59 0.54 15 3 C -0.23 -5.01 9.76 -40.01 -0.39 -5.40 15 4 C 0.10 2.11 5.34 -82.26 -0.44 1.67 15 5 C 0.03 0.77 1.41 -92.92 -0.13 0.63 15 6 H 0.08 1.78 4.49 -51.93 -0.23 1.55 15 7 C -0.52 -13.34 7.74 -34.44 -0.27 -13.60 15 8 H 0.10 2.68 7.79 -52.49 -0.41 2.27 15 9 C 0.10 2.54 5.47 -17.82 -0.10 2.45 15 10 N -0.87 -24.31 13.96 55.43 0.77 -23.53 15 11 Si 0.86 19.76 27.34 -169.99 -4.65 15.12 15 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 14 H -0.26 -5.57 6.35 56.52 0.36 -5.21 15 15 C 0.46 9.75 2.68 37.16 0.10 9.85 15 16 F -0.18 -3.86 17.06 2.25 0.04 -3.82 15 17 F -0.21 -4.04 16.30 2.25 0.04 -4.00 15 18 F -0.18 -3.94 16.39 2.25 0.04 -3.90 15 19 N -0.38 -7.79 4.01 -63.89 -0.26 -8.05 15 20 C 0.10 1.61 11.06 59.85 0.66 2.27 15 21 N -0.31 -6.47 12.58 33.67 0.42 -6.05 15 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.15 3.27 7.94 -52.48 -0.42 2.85 15 26 H 0.27 7.15 8.31 -40.82 -0.34 6.82 15 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 29 H 0.08 1.25 6.85 -51.93 -0.36 0.90 15 LS Contribution 265.40 15.07 4.00 4.00 Total: -1.00 -29.08 265.40 -3.08 -32.16 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.71 Total: 0.24 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.78 Total: -2.16 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.94 Total: -37.63 kcal Atomic # 9 Polarization: -11.83 SS G_CDS: 0.11 Total: -11.72 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.65 Total: 15.12 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.08 -3.08 -32.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149975.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.353 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds