Wall clock time and date at job start Mon Mar 30 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39877 * 125.89518 * 2 1 4 4 C 1.35318 * 107.91888 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.12861 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47093 * 155.02236 * 5 4 3 7 7 C 1.50700 * 109.46996 * 35.01840 * 5 4 3 8 8 H 1.08000 * 119.99620 * 271.44557 * 7 5 4 9 9 C 1.37875 * 119.99910 * 91.44900 * 7 5 4 10 10 N 1.31511 * 119.99927 * 187.65153 * 9 7 5 11 11 Si 1.86800 * 120.00082 * 7.64443 * 9 7 5 12 12 H 1.48502 * 109.47349 * 274.84885 * 11 9 7 13 13 H 1.48504 * 109.46801 * 154.85261 * 11 9 7 14 14 H 1.48498 * 109.47101 * 34.85493 * 11 9 7 15 15 C 1.53004 * 109.46788 * 275.02162 * 5 4 3 16 16 F 1.39893 * 109.46858 * 181.26862 * 15 5 4 17 17 F 1.39897 * 109.46853 * 301.26271 * 15 5 4 18 18 F 1.39893 * 109.47065 * 61.26172 * 15 5 4 19 19 N 1.34952 * 107.74559 * 0.22166 * 4 3 2 20 20 C 1.46498 * 126.03598 * 179.77726 * 19 4 3 21 21 N 1.30828 * 125.89974 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47453 * 90.00320 * 1 2 3 23 23 H 1.09005 * 109.47418 * 210.00527 * 1 2 3 24 24 H 1.08999 * 109.47451 * 330.00450 * 1 2 3 25 25 H 1.08003 * 126.04167 * 0.05150 * 3 2 1 26 26 H 0.97002 * 120.00403 * 179.97438 * 10 9 7 27 27 H 1.08998 * 109.47605 * 90.00297 * 20 19 4 28 28 H 1.09005 * 109.46973 * 210.00001 * 20 19 4 29 29 H 1.08996 * 109.47282 * 329.99960 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0006 5 6 4.8350 1.5991 -0.0013 6 1 5.6757 1.0575 0.4323 7 6 4.5601 2.8363 0.8139 8 1 4.1248 3.7063 0.3449 9 6 4.8643 2.8576 2.1585 10 7 4.4891 3.8757 2.9016 11 14 5.8093 1.4401 2.9249 12 1 4.8619 0.3616 3.3050 13 1 6.5252 1.9192 4.1346 14 1 6.7921 0.9129 1.9444 15 6 5.1733 2.0001 -1.4386 16 9 6.3234 2.7966 -1.4420 17 9 5.4003 0.8502 -2.2024 18 9 4.1058 2.7200 -1.9854 19 7 3.6088 -0.6340 -0.0059 20 6 4.7899 -1.5006 -0.0129 21 7 2.2741 -1.0598 -0.0005 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.9922 2.1599 0.0008 26 1 4.7028 3.8906 3.8477 27 1 5.0860 -1.7196 1.0129 28 1 4.5548 -2.4311 -0.5298 29 1 5.6077 -0.9959 -0.5273 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149975.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:33 Heat of formation + Delta-G solvation = -105.197761 kcal Electronic energy + Delta-G solvation = -19101.639282 eV Core-core repulsion = 15610.563289 eV Total energy + Delta-G solvation = -3491.075994 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.95296 -48.47442 -48.38739 -42.13706 -36.18744 -34.77593 -33.40030 -30.49836 -29.53477 -26.96156 -26.21123 -23.93828 -21.37927 -20.47778 -19.73820 -19.25410 -18.50006 -18.37542 -17.42909 -16.30536 -16.19577 -15.41541 -15.36196 -14.98920 -14.90711 -14.80819 -14.60077 -14.58113 -14.36622 -14.30446 -13.78436 -13.61100 -13.18958 -13.13621 -13.01100 -12.70047 -12.38030 -11.93173 -11.84330 -11.45138 -10.93680 -9.97418 -9.34417 -8.46570 -6.58080 0.83905 1.23455 1.26219 1.33125 1.62349 1.80644 2.09099 2.18779 2.78680 3.15098 3.29236 3.34787 3.67191 3.93906 4.19634 4.26892 4.32098 4.48853 4.54868 4.83591 4.87982 5.01402 5.08648 5.14059 5.44996 5.88539 5.97258 6.13861 6.51126 6.81624 7.06799 8.67422 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.012934 C = 0.010429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.126030 B = 2164.241370 C = 2684.105400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.057 3.943 3 C -0.253 4.253 4 C 0.081 3.919 5 C 0.038 3.962 6 H 0.093 0.907 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.047 3.953 10 N -0.912 5.912 11 Si 0.912 3.088 12 H -0.272 1.272 13 H -0.272 1.272 14 H -0.231 1.231 15 C 0.463 3.537 16 F -0.181 7.181 17 F -0.192 7.192 18 F -0.186 7.186 19 N -0.383 5.383 20 C 0.086 3.914 21 N -0.322 5.322 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.275 0.725 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -9.065 -5.324 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C -0.283 4.283 4 C -0.047 4.047 5 C 0.017 3.983 6 H 0.111 0.889 7 C -0.553 4.553 8 H 0.077 0.923 9 C -0.156 4.156 10 N -0.548 5.548 11 Si 0.735 3.265 12 H -0.198 1.198 13 H -0.197 1.197 14 H -0.154 1.154 15 C 0.408 3.592 16 F -0.163 7.163 17 F -0.173 7.173 18 F -0.168 7.168 19 N -0.166 5.166 20 C -0.054 4.054 21 N -0.145 5.145 22 H 0.109 0.891 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.153 0.847 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.114 -10.336 -5.171 11.558 hybrid contribution 0.498 0.876 0.421 1.092 sum 0.612 -9.460 -4.750 10.603 Atomic orbital electron populations 1.20245 0.84029 1.03953 1.03957 1.22897 0.98640 0.90061 0.99262 1.21168 0.91531 0.99747 1.15807 1.21551 0.97886 0.84024 1.01202 1.18910 0.93820 0.96442 0.89175 0.88935 1.20372 1.43876 0.96881 0.94181 0.92301 1.25616 0.95088 0.97979 0.96953 1.69952 1.44876 1.32495 1.07473 0.86221 0.80396 0.80156 0.79768 1.19767 1.19673 1.15405 1.20703 0.74019 0.74402 0.90064 1.93117 1.51094 1.75075 1.96989 1.93098 1.94707 1.50404 1.79118 1.93102 1.56931 1.79032 1.87716 1.48650 1.05951 1.04175 1.57802 1.22158 0.83676 0.95492 1.04087 1.77054 0.86734 1.23244 1.27497 0.89068 0.90143 0.89645 0.84714 0.91527 0.90317 0.87021 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.45 71.23 0.74 -0.96 15 2 C 0.06 2.14 7.22 43.10 0.31 2.45 15 3 C -0.25 -11.00 9.76 21.99 0.21 -10.78 15 4 C 0.08 3.49 5.34 41.41 0.22 3.71 15 5 C 0.04 1.69 1.41 -12.28 -0.02 1.68 15 6 H 0.09 3.84 4.49 -2.39 -0.01 3.83 15 7 C -0.52 -27.04 7.74 25.60 0.20 -26.84 15 8 H 0.06 3.45 7.79 -2.91 -0.02 3.42 15 9 C 0.05 2.50 5.47 84.65 0.46 2.96 15 10 N -0.91 -52.29 13.96 21.45 0.30 -51.99 15 11 Si 0.91 39.58 27.34 68.60 1.88 41.46 15 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 14 H -0.23 -8.78 6.35 99.48 0.63 -8.15 15 15 C 0.46 19.22 2.68 71.98 0.19 19.41 15 16 F -0.18 -7.54 17.06 44.97 0.77 -6.77 15 17 F -0.19 -7.07 16.30 44.97 0.73 -6.34 15 18 F -0.19 -8.12 16.39 44.97 0.74 -7.38 15 19 N -0.38 -14.82 4.01 -356.03 -1.43 -16.25 15 20 C 0.09 2.46 11.06 127.77 1.41 3.87 15 21 N -0.32 -12.57 12.58 -47.39 -0.60 -13.17 15 22 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.08 1.92 8.14 -2.38 -0.02 1.90 15 24 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.13 6.10 7.94 -2.91 -0.02 6.08 15 26 H 0.28 14.72 8.31 -92.71 -0.77 13.95 15 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 28 H 0.11 2.58 8.14 -2.38 -0.02 2.56 15 29 H 0.09 2.47 6.85 -2.39 -0.02 2.45 15 Total: -1.00 -62.02 265.40 7.23 -54.79 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.11 Total: 10.16 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 3.74 Total: -4.50 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.73 Total: -81.41 kcal Atomic # 9 Polarization: -22.73 SS G_CDS: 2.24 Total: -20.49 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.88 Total: 41.46 kcal Total: -62.02 7.23 -54.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149975.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.410 kcal (2) G-P(sol) polarization free energy of solvation -62.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds