Wall clock time and date at job start Mon Mar 30 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47194 * 239.99848 * 3 2 1 5 5 H 1.48501 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47249 * 119.99880 * 3 2 1 7 7 C 1.37882 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99668 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46805 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47376 * 55.00575 * 10 9 7 12 12 N 1.46899 * 109.47320 * 295.00124 * 10 9 7 13 13 C 1.50709 * 109.47178 * 175.00392 * 10 9 7 14 14 C 1.32090 * 124.29531 * 259.99870 * 13 10 9 15 15 C 1.44903 * 114.82871 * 179.72707 * 14 13 10 16 16 C 1.41406 * 130.46097 * 180.29756 * 15 14 13 17 17 C 1.36123 * 119.28353 * 179.97438 * 16 15 14 18 18 N 1.32306 * 121.45933 * 0.02562 * 17 16 15 19 19 C 1.31471 * 122.06798 * 0.02562 * 18 17 16 20 20 C 1.39538 * 120.61260 * 359.97438 * 19 18 17 21 21 S 1.75348 * 124.30032 * 80.15257 * 13 10 9 22 22 H 0.97003 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47449 * 60.00297 * 9 7 2 24 24 H 1.09002 * 109.47896 * 300.00006 * 9 7 2 25 25 H 1.00904 * 111.00205 * 300.00268 * 12 10 9 26 26 H 1.00899 * 110.99718 * 63.95600 * 12 10 9 27 27 H 1.08002 * 122.58915 * 0.02562 * 14 13 10 28 28 H 1.07995 * 120.36058 * 359.94959 * 16 15 14 29 29 H 1.08000 * 119.26922 * 180.02562 * 17 16 15 30 30 H 1.08004 * 119.69826 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9293 -3.5553 0.8413 12 7 3.0083 -3.6539 -1.2557 13 6 1.4958 -4.9637 0.1232 14 6 1.3608 -5.6407 1.2494 15 6 0.5934 -6.8645 1.1354 16 6 0.2452 -7.8238 2.1142 17 6 -0.4962 -8.9063 1.7515 18 7 -0.8979 -9.0811 0.5031 19 6 -0.6051 -8.2251 -0.4508 20 6 0.1506 -7.0850 -0.1749 21 16 0.6956 -5.7739 -1.2102 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5572 0.8897 25 1 2.3961 -3.7517 -2.0518 26 1 3.5701 -2.8192 -1.3319 27 1 1.7852 -5.3053 2.1842 28 1 0.5644 -7.6993 3.1384 29 1 -0.7623 -9.6386 2.4994 30 1 -0.9527 -8.4059 -1.4572 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260160370.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:51 Heat of formation + Delta-G solvation = 39.660013 kcal Electronic energy + Delta-G solvation = -14886.069599 eV Core-core repulsion = 12385.884721 eV Total energy + Delta-G solvation = -2500.184878 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.12017 -36.97921 -34.71317 -32.52912 -31.32792 -29.86118 -28.09605 -25.06765 -23.95596 -22.89673 -21.03121 -20.03419 -17.62126 -16.83143 -16.29752 -15.98960 -14.83800 -14.72865 -14.52557 -14.21816 -13.91473 -13.46738 -13.05405 -12.66708 -12.30340 -11.92582 -11.69682 -11.49131 -11.07792 -10.83090 -10.67742 -10.29443 -10.06312 -9.77833 -9.61941 -9.36431 -8.73990 -8.54236 -7.94709 -7.60810 -6.17822 -4.23904 0.79542 1.08335 1.65026 2.20538 2.52396 3.22353 3.28160 3.29467 3.83548 4.29975 4.46472 4.58543 4.84238 5.02516 5.16345 5.26093 5.47294 5.60529 5.63779 5.73926 5.95322 6.10536 6.36088 6.44023 6.61046 6.62901 7.28697 7.40450 7.72593 7.80943 7.95383 8.02342 8.15656 8.81691 9.42080 10.92728 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.044024 B = 0.005037 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.864637 B = 5557.103107 C = 5679.465432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.001 3.999 10 C 0.147 3.853 11 H 0.091 0.909 12 N -0.838 5.838 13 C -0.088 4.088 14 C -0.160 4.160 15 C -0.021 4.021 16 C -0.137 4.137 17 C 0.075 3.925 18 N -0.484 5.484 19 C 0.157 3.843 20 C -0.217 4.217 21 S 0.130 5.870 22 H 0.264 0.736 23 H 0.021 0.979 24 H 0.023 0.977 25 H 0.330 0.670 26 H 0.353 0.647 27 H 0.147 0.853 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -12.911 0.745 12.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.038 4.038 10 C 0.034 3.966 11 H 0.109 0.891 12 N -0.367 5.367 13 C -0.206 4.206 14 C -0.189 4.189 15 C -0.038 4.038 16 C -0.158 4.158 17 C -0.076 4.076 18 N -0.194 5.194 19 C -0.013 4.013 20 C -0.335 4.335 21 S 0.394 5.606 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.141 0.859 26 H 0.168 0.832 27 H 0.165 0.835 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.574 -13.840 -0.617 13.866 hybrid contribution 0.429 2.349 1.625 2.888 sum 1.003 -11.492 1.008 11.579 Atomic orbital electron populations 1.69955 1.06157 1.27111 1.49420 1.25008 0.94838 0.99397 0.94784 0.86603 0.79552 0.82815 0.78738 1.20091 1.21208 1.20116 1.21040 0.92876 0.90534 1.52481 0.92370 1.19843 0.94298 0.91365 0.98315 1.20345 0.94492 0.87900 0.93848 0.89073 1.59266 1.27776 1.46355 1.03339 1.24640 1.00155 1.00073 0.95723 1.20650 1.04358 0.94283 0.99652 1.19454 0.96677 0.95092 0.92565 1.21627 1.00020 0.94493 0.99659 1.22053 0.95661 0.96599 0.93262 1.67679 1.21198 1.29240 1.01277 1.22187 0.92733 0.87650 0.98684 1.23935 1.07700 1.02904 0.98973 1.84053 1.52412 1.13834 1.10291 0.92661 0.96094 0.95855 0.85910 0.83218 0.83530 0.84656 0.82820 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -13.80 8.55 -34.44 -0.29 -14.09 16 8 H 0.06 1.44 7.15 -52.49 -0.38 1.06 16 9 C 0.00 0.01 4.60 -27.88 -0.13 -0.11 16 10 C 0.15 2.86 3.16 -68.86 -0.22 2.65 16 11 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 12 N -0.84 -14.96 9.10 -5.65 -0.05 -15.01 16 13 C -0.09 -1.56 5.35 -36.23 -0.19 -1.76 16 14 C -0.16 -2.64 10.19 -38.87 -0.40 -3.04 16 15 C -0.02 -0.33 6.10 -105.37 -0.64 -0.98 16 16 C -0.14 -1.77 10.13 -39.14 -0.40 -2.16 16 17 C 0.07 0.93 11.07 -18.11 -0.20 0.73 16 18 N -0.48 -6.84 10.34 -13.41 -0.14 -6.98 16 19 C 0.16 2.19 11.24 -17.22 -0.19 1.99 16 20 C -0.22 -3.37 6.52 -38.41 -0.25 -3.62 16 21 S 0.13 2.08 22.31 -107.50 -2.40 -0.32 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.33 5.74 8.25 -39.29 -0.32 5.41 16 26 H 0.35 6.34 7.90 -39.29 -0.31 6.03 16 27 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 28 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.16 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 276.49 15.07 4.17 4.17 Total: -1.00 -29.22 276.49 -8.82 -38.04 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.10 Total: 8.18 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.01 Total: -18.78 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.55 Total: -46.85 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.40 Total: -0.32 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.22 -8.82 -38.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160370.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.699 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds