Wall clock time and date at job start Mon Mar 30 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47194 * 239.99848 * 3 2 1 5 5 H 1.48501 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47249 * 119.99880 * 3 2 1 7 7 C 1.37882 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99668 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46805 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47376 * 55.00575 * 10 9 7 12 12 N 1.46899 * 109.47320 * 295.00124 * 10 9 7 13 13 C 1.50709 * 109.47178 * 175.00392 * 10 9 7 14 14 C 1.32090 * 124.29531 * 259.99870 * 13 10 9 15 15 C 1.44903 * 114.82871 * 179.72707 * 14 13 10 16 16 C 1.41406 * 130.46097 * 180.29756 * 15 14 13 17 17 C 1.36123 * 119.28353 * 179.97438 * 16 15 14 18 18 N 1.32306 * 121.45933 * 0.02562 * 17 16 15 19 19 C 1.31471 * 122.06798 * 0.02562 * 18 17 16 20 20 C 1.39538 * 120.61260 * 359.97438 * 19 18 17 21 21 S 1.75348 * 124.30032 * 80.15257 * 13 10 9 22 22 H 0.97003 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47449 * 60.00297 * 9 7 2 24 24 H 1.09002 * 109.47896 * 300.00006 * 9 7 2 25 25 H 1.00904 * 111.00205 * 300.00268 * 12 10 9 26 26 H 1.00899 * 110.99718 * 63.95600 * 12 10 9 27 27 H 1.08002 * 122.58915 * 0.02562 * 14 13 10 28 28 H 1.07995 * 120.36058 * 359.94959 * 16 15 14 29 29 H 1.08000 * 119.26922 * 180.02562 * 17 16 15 30 30 H 1.08004 * 119.69826 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9293 -3.5553 0.8413 12 7 3.0083 -3.6539 -1.2557 13 6 1.4958 -4.9637 0.1232 14 6 1.3608 -5.6407 1.2494 15 6 0.5934 -6.8645 1.1354 16 6 0.2452 -7.8238 2.1142 17 6 -0.4962 -8.9063 1.7515 18 7 -0.8979 -9.0811 0.5031 19 6 -0.6051 -8.2251 -0.4508 20 6 0.1506 -7.0850 -0.1749 21 16 0.6956 -5.7739 -1.2102 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5572 0.8897 25 1 2.3961 -3.7517 -2.0518 26 1 3.5701 -2.8192 -1.3319 27 1 1.7852 -5.3053 2.1842 28 1 0.5644 -7.6993 3.1384 29 1 -0.7623 -9.6386 2.4994 30 1 -0.9527 -8.4059 -1.4572 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260160370.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:51 Heat of formation + Delta-G solvation = 20.833574 kcal Electronic energy + Delta-G solvation = -14886.885975 eV Core-core repulsion = 12385.884721 eV Total energy + Delta-G solvation = -2501.001254 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20887 -38.42241 -36.13951 -34.45937 -32.36347 -31.10511 -29.95881 -26.66536 -25.10733 -24.37184 -22.43778 -21.43449 -18.96807 -18.50174 -17.40707 -17.38482 -16.64720 -16.16647 -15.74729 -15.38696 -15.13274 -14.71759 -14.56382 -14.33706 -14.05350 -13.41951 -13.07445 -12.92362 -12.68021 -12.51377 -12.33548 -11.93608 -11.67755 -11.30678 -10.85883 -10.68699 -10.63426 -10.01277 -9.48624 -8.79903 -8.24542 -6.37333 -0.39524 0.03214 0.43294 0.96368 1.28117 1.41043 1.42281 1.50243 2.37629 2.77233 3.09410 3.33620 3.53474 3.76588 3.92165 3.98788 4.12945 4.40480 4.47169 4.62317 4.68552 4.71933 4.94475 5.09821 5.29668 5.31804 5.47579 5.62095 5.69956 6.08894 6.21226 6.56555 6.78128 6.90815 7.33351 8.86627 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.044024 B = 0.005037 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.864637 B = 5557.103107 C = 5679.465432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.011 3.989 10 C 0.163 3.837 11 H 0.091 0.909 12 N -0.827 5.827 13 C -0.123 4.123 14 C -0.152 4.152 15 C -0.045 4.045 16 C -0.132 4.132 17 C 0.076 3.924 18 N -0.493 5.493 19 C 0.151 3.849 20 C -0.227 4.227 21 S 0.127 5.873 22 H 0.263 0.737 23 H -0.005 1.005 24 H -0.010 1.010 25 H 0.333 0.667 26 H 0.353 0.647 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.192 0.808 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -13.972 1.451 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.088 0.912 9 C -0.028 4.028 10 C 0.049 3.951 11 H 0.109 0.891 12 N -0.356 5.356 13 C -0.240 4.240 14 C -0.181 4.181 15 C -0.061 4.061 16 C -0.154 4.154 17 C -0.075 4.075 18 N -0.203 5.203 19 C -0.018 4.018 20 C -0.345 4.345 21 S 0.391 5.609 22 H 0.072 0.928 23 H 0.013 0.987 24 H 0.009 0.991 25 H 0.144 0.856 26 H 0.167 0.833 27 H 0.177 0.823 28 H 0.183 0.817 29 H 0.209 0.791 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.338 -14.916 0.077 14.976 hybrid contribution 0.139 2.532 1.468 2.930 sum 1.476 -12.384 1.544 12.566 Atomic orbital electron populations 1.70102 1.07965 1.27909 1.51073 1.25930 0.95587 1.03311 0.94504 0.85501 0.78175 0.78088 0.79289 1.18870 1.21464 1.19235 1.21481 0.93631 0.91343 1.51233 0.91163 1.19686 0.94486 0.93240 0.95407 1.19982 0.93324 0.87304 0.94468 0.89099 1.59262 1.27332 1.46071 1.02928 1.24469 1.02067 1.00313 0.97194 1.20920 1.03270 0.94304 0.99623 1.19687 0.97391 0.95521 0.93493 1.21994 0.99242 0.93574 1.00546 1.22698 0.94431 0.96963 0.93359 1.67774 1.21274 1.29201 1.02061 1.22565 0.92336 0.87055 0.99869 1.24096 1.08317 1.03184 0.98923 1.83900 1.52663 1.14276 1.10043 0.92796 0.98695 0.99124 0.85592 0.83251 0.82313 0.81684 0.79149 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.96 42.22 29.54 68.60 2.03 44.25 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -28.24 8.55 25.60 0.22 -28.02 16 8 H 0.07 3.43 7.15 -2.91 -0.02 3.41 16 9 C 0.01 0.54 4.60 29.85 0.14 0.68 16 10 C 0.16 6.40 3.16 44.17 0.14 6.54 16 11 H 0.09 3.53 8.10 -2.39 -0.02 3.52 16 12 N -0.83 -29.46 9.10 -171.79 -1.56 -31.02 16 13 C -0.12 -4.39 5.35 24.73 0.13 -4.26 16 14 C -0.15 -4.91 10.19 23.01 0.23 -4.67 16 15 C -0.04 -1.33 6.10 -20.35 -0.12 -1.46 16 16 C -0.13 -3.05 10.13 22.56 0.23 -2.82 16 17 C 0.08 1.64 11.07 84.13 0.93 2.57 16 18 N -0.49 -12.72 10.34 -196.35 -2.03 -14.75 16 19 C 0.15 3.96 11.24 85.06 0.96 4.92 16 20 C -0.23 -6.84 6.52 23.03 0.15 -6.69 16 21 S 0.13 4.09 22.31 -56.49 -1.26 2.83 16 22 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 23 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H 0.33 11.66 8.25 -89.69 -0.74 10.92 16 26 H 0.35 12.51 7.90 -89.69 -0.71 11.80 16 27 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 28 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -62.98 276.49 0.65 -62.33 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.27 Total: 23.46 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 3.47 Total: -32.46 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -3.31 Total: -100.40 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.26 Total: 2.83 kcal Total: -62.98 0.65 -62.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160370.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.159 kcal (2) G-P(sol) polarization free energy of solvation -62.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds