Wall clock time and date at job start Mon Mar 30 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99674 * 2 1 4 4 H 1.48503 * 109.46850 * 269.99703 * 3 2 1 5 5 H 1.48501 * 109.47270 * 29.99545 * 3 2 1 6 6 H 1.48505 * 109.47347 * 149.99788 * 3 2 1 7 7 C 1.37874 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99804 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47284 * 180.02562 * 10 9 7 12 12 C 1.38262 * 120.00060 * 270.02036 * 11 10 9 13 13 C 1.38204 * 120.00476 * 180.02562 * 12 11 10 14 14 C 1.38254 * 119.99866 * 0.04292 * 13 12 11 15 15 C 1.38220 * 120.00045 * 359.90929 * 14 13 12 16 16 C 1.50702 * 120.00039 * 180.34221 * 15 14 13 17 17 C 1.53045 * 113.14845 * 40.27660 * 16 15 14 18 18 S 1.81501 * 89.86398 * 211.86356 * 17 16 15 19 19 C 1.53039 * 113.15405 * 299.84972 * 16 15 14 20 20 C 1.38207 * 120.00371 * 89.99880 * 11 10 9 21 21 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47129 * 60.00100 * 9 7 2 23 23 H 1.09001 * 109.47211 * 300.00438 * 9 7 2 24 24 H 1.09001 * 109.47121 * 59.99890 * 10 9 7 25 25 H 1.09001 * 109.47185 * 300.00249 * 10 9 7 26 26 H 1.07999 * 119.99755 * 359.97368 * 12 11 10 27 27 H 1.08005 * 120.00182 * 179.97438 * 13 12 11 28 28 H 1.08002 * 120.00347 * 179.97438 * 14 13 12 29 29 H 1.08998 * 112.49359 * 170.05880 * 16 15 14 30 30 H 1.09005 * 113.15055 * 327.10752 * 17 16 15 31 31 H 1.09003 * 113.15018 * 96.59526 * 17 16 15 32 32 H 1.08999 * 113.14606 * 263.40247 * 19 16 15 33 33 H 1.09004 * 113.15164 * 32.84463 * 19 16 15 34 34 H 1.08000 * 120.00334 * 0.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4919 -4.9671 0.0033 12 6 1.1455 -5.5649 1.2009 13 6 0.4550 -6.7620 1.2015 14 6 0.1114 -7.3624 0.0045 15 6 0.4568 -6.7644 -1.1929 16 6 0.0754 -7.4149 -2.4977 17 6 -1.3297 -8.0210 -2.4797 18 16 -0.7823 -9.3135 -3.6304 19 6 0.6737 -8.8129 -2.6705 20 6 1.1468 -5.5663 -1.1933 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5563 0.8919 24 1 2.8720 -3.6034 0.8927 25 1 2.8720 -3.6050 -0.8873 26 1 1.4153 -5.0967 2.1360 27 1 0.1848 -7.2292 2.1370 28 1 -0.4279 -8.2982 0.0048 29 1 0.2508 -6.7647 -3.3547 30 1 -1.6160 -8.4105 -1.5027 31 1 -2.0865 -7.3613 -2.9043 32 1 1.5938 -8.8159 -3.2548 33 1 0.7749 -9.3550 -1.7303 34 1 1.4173 -5.0995 -2.1289 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260170018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:28 Heat of formation + Delta-G solvation = 22.986608 kcal Electronic energy + Delta-G solvation = -15048.882048 eV Core-core repulsion = 12651.514500 eV Total energy + Delta-G solvation = -2397.367548 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57698 -36.61796 -33.88687 -32.00615 -30.37439 -28.80315 -26.44649 -25.10359 -23.43855 -22.17512 -21.00603 -19.14037 -17.11114 -16.32646 -16.08227 -15.75378 -14.75500 -14.50222 -14.22427 -13.56750 -13.46859 -13.18094 -12.87882 -12.54579 -12.45316 -12.00356 -11.90231 -11.34351 -11.11868 -11.03813 -10.93972 -10.73901 -10.51523 -10.17755 -9.83345 -9.63449 -9.12708 -8.52305 -8.36660 -8.14768 -7.97873 -6.02062 -4.05385 1.41174 1.71808 1.75639 1.79918 3.30488 3.36956 3.39982 3.92521 4.43775 4.48645 4.52833 4.74684 4.93717 5.10771 5.19000 5.22895 5.33618 5.34423 5.45804 5.49550 5.70049 5.79898 5.97124 6.09404 6.31140 6.44888 6.62175 6.74315 6.79250 6.97025 7.08903 7.34227 7.64958 7.78482 7.97444 8.37878 9.01638 9.58962 11.08922 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035469 B = 0.004159 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.235281 B = 6730.749487 C = 7101.207418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.081 4.081 11 C -0.053 4.053 12 C -0.117 4.117 13 C -0.118 4.118 14 C -0.133 4.133 15 C -0.081 4.081 16 C -0.047 4.047 17 C -0.072 4.072 18 S -0.312 6.312 19 C -0.070 4.070 20 C -0.107 4.107 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 -16.541 -1.982 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.119 4.119 11 C -0.053 4.053 12 C -0.135 4.135 13 C -0.136 4.136 14 C -0.151 4.151 15 C -0.083 4.083 16 C -0.066 4.066 17 C -0.220 4.220 18 S -0.085 6.085 19 C -0.218 4.218 20 C -0.125 4.125 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.506 -17.355 -3.064 17.631 hybrid contribution 0.633 1.609 0.842 1.923 sum 0.127 -15.747 -2.222 15.903 Atomic orbital electron populations 1.69969 1.06069 1.26644 1.50640 1.25017 0.94831 0.99243 0.95256 0.86600 0.79852 0.83459 0.78133 1.20637 1.21213 1.19845 1.21254 0.93059 0.90977 1.50876 0.92594 1.19070 0.93646 0.90441 0.97537 1.20861 0.98392 0.91252 1.01381 1.20383 0.96276 0.96154 0.92477 1.21136 0.98954 0.95317 0.98136 1.21029 0.99034 0.96018 0.97503 1.20774 1.02045 1.00156 0.92099 1.19387 1.00112 0.95761 0.93067 1.21433 0.92499 0.95074 0.97636 1.24528 1.01152 0.96391 0.99972 1.88968 1.13751 1.56875 1.48941 1.24462 0.99125 0.96978 1.01248 1.20956 0.98843 0.94472 0.98268 0.92964 0.96424 0.96443 0.92167 0.92184 0.86139 0.86508 0.86801 0.86509 0.87430 0.88224 0.88406 0.87613 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.76 4.95 -27.89 -0.14 0.63 16 10 C -0.08 -1.64 5.28 -27.89 -0.15 -1.78 16 11 C -0.05 -0.92 5.13 -104.63 -0.54 -1.45 16 12 C -0.12 -1.84 9.70 -39.58 -0.38 -2.23 16 13 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 14 C -0.13 -1.63 8.60 -39.58 -0.34 -1.97 16 15 C -0.08 -1.05 5.23 -104.62 -0.55 -1.59 16 16 C -0.05 -0.50 3.65 -91.73 -0.33 -0.83 16 17 C -0.07 -0.74 7.33 37.18 0.27 -0.46 16 18 S -0.31 -3.55 24.80 -107.50 -2.67 -6.22 16 19 C -0.07 -0.68 7.42 37.18 0.28 -0.40 16 20 C -0.11 -1.66 9.36 -39.59 -0.37 -2.03 16 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 25 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 26 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 28 H 0.11 1.12 6.63 -52.49 -0.35 0.78 16 29 H 0.12 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.11 1.00 6.39 -51.93 -0.33 0.66 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 0.94 7.61 -51.93 -0.40 0.55 16 34 H 0.12 1.80 8.04 -52.49 -0.42 1.38 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -29.95 297.87 -10.36 -40.30 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.83 Total: -1.52 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -3.06 Total: -27.45 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.67 Total: -6.22 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.95 -10.36 -40.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.289 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds