Wall clock time and date at job start Mon Mar 30 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99674 * 2 1 4 4 H 1.48503 * 109.46850 * 269.99703 * 3 2 1 5 5 H 1.48501 * 109.47270 * 29.99545 * 3 2 1 6 6 H 1.48505 * 109.47347 * 149.99788 * 3 2 1 7 7 C 1.37874 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99804 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47284 * 180.02562 * 10 9 7 12 12 C 1.38262 * 120.00060 * 270.02036 * 11 10 9 13 13 C 1.38204 * 120.00476 * 180.02562 * 12 11 10 14 14 C 1.38254 * 119.99866 * 0.04292 * 13 12 11 15 15 C 1.38220 * 120.00045 * 359.90929 * 14 13 12 16 16 C 1.50702 * 120.00039 * 180.34221 * 15 14 13 17 17 C 1.53045 * 113.14845 * 40.27660 * 16 15 14 18 18 S 1.81501 * 89.86398 * 211.86356 * 17 16 15 19 19 C 1.53039 * 113.15405 * 299.84972 * 16 15 14 20 20 C 1.38207 * 120.00371 * 89.99880 * 11 10 9 21 21 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47129 * 60.00100 * 9 7 2 23 23 H 1.09001 * 109.47211 * 300.00438 * 9 7 2 24 24 H 1.09001 * 109.47121 * 59.99890 * 10 9 7 25 25 H 1.09001 * 109.47185 * 300.00249 * 10 9 7 26 26 H 1.07999 * 119.99755 * 359.97368 * 12 11 10 27 27 H 1.08005 * 120.00182 * 179.97438 * 13 12 11 28 28 H 1.08002 * 120.00347 * 179.97438 * 14 13 12 29 29 H 1.08998 * 112.49359 * 170.05880 * 16 15 14 30 30 H 1.09005 * 113.15055 * 327.10752 * 17 16 15 31 31 H 1.09003 * 113.15018 * 96.59526 * 17 16 15 32 32 H 1.08999 * 113.14606 * 263.40247 * 19 16 15 33 33 H 1.09004 * 113.15164 * 32.84463 * 19 16 15 34 34 H 1.08000 * 120.00334 * 0.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4919 -4.9671 0.0033 12 6 1.1455 -5.5649 1.2009 13 6 0.4550 -6.7620 1.2015 14 6 0.1114 -7.3624 0.0045 15 6 0.4568 -6.7644 -1.1929 16 6 0.0754 -7.4149 -2.4977 17 6 -1.3297 -8.0210 -2.4797 18 16 -0.7823 -9.3135 -3.6304 19 6 0.6737 -8.8129 -2.6705 20 6 1.1468 -5.5663 -1.1933 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5563 0.8919 24 1 2.8720 -3.6034 0.8927 25 1 2.8720 -3.6050 -0.8873 26 1 1.4153 -5.0967 2.1360 27 1 0.1848 -7.2292 2.1370 28 1 -0.4279 -8.2982 0.0048 29 1 0.2508 -6.7647 -3.3547 30 1 -1.6160 -8.4105 -1.5027 31 1 -2.0865 -7.3613 -2.9043 32 1 1.5938 -8.8159 -3.2548 33 1 0.7749 -9.3550 -1.7303 34 1 1.4173 -5.0995 -2.1289 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260170018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:28 Heat of formation + Delta-G solvation = 8.772190 kcal Electronic energy + Delta-G solvation = -15049.498431 eV Core-core repulsion = 12651.514500 eV Total energy + Delta-G solvation = -2397.983931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66478 -37.66213 -35.69838 -33.75751 -31.48761 -30.39933 -27.25190 -26.88566 -24.54097 -23.62673 -22.47190 -20.33431 -18.54017 -17.97995 -17.03220 -16.79063 -16.52065 -15.90799 -15.35880 -14.66863 -14.58669 -14.43546 -14.11203 -14.05293 -13.84951 -13.44990 -13.06655 -12.85416 -12.72109 -12.51050 -12.25820 -11.98262 -11.80759 -11.70959 -11.51558 -11.19267 -10.96350 -10.55670 -9.62731 -9.39843 -8.85608 -8.19590 -6.31725 0.39127 0.57396 0.90364 0.92615 1.40826 1.41968 1.53191 2.41203 2.84020 3.13346 3.59351 3.62539 3.86340 4.02645 4.13055 4.18229 4.29590 4.40581 4.52122 4.55589 4.62807 4.69880 4.80671 4.87967 5.00677 5.05779 5.20650 5.30712 5.49694 5.59411 5.64179 5.69270 5.84696 5.95189 6.18371 6.24267 6.85357 7.37926 8.91843 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035469 B = 0.004159 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.235281 B = 6730.749487 C = 7101.207418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.038 3.962 10 C -0.067 4.067 11 C -0.083 4.083 12 C -0.134 4.134 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.073 4.073 16 C -0.047 4.047 17 C -0.063 4.063 18 S -0.351 6.351 19 C -0.055 4.055 20 C -0.122 4.122 21 H 0.263 0.737 22 H -0.011 1.011 23 H -0.011 1.011 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 -17.755 -1.685 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.001 3.999 10 C -0.105 4.105 11 C -0.083 4.083 12 C -0.152 4.152 13 C -0.132 4.132 14 C -0.140 4.140 15 C -0.075 4.075 16 C -0.066 4.066 17 C -0.211 4.211 18 S -0.124 6.124 19 C -0.203 4.203 20 C -0.140 4.140 21 H 0.072 0.928 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.121 -18.583 -2.770 18.789 hybrid contribution 0.469 1.913 0.747 2.106 sum 0.349 -16.670 -2.023 16.796 Atomic orbital electron populations 1.70106 1.07862 1.27773 1.51602 1.25976 0.95726 1.03347 0.94642 0.85453 0.78709 0.78399 0.78528 1.19752 1.20781 1.18617 1.21724 0.93636 0.92289 1.50672 0.91983 1.18901 0.93993 0.92336 0.94712 1.20566 0.97310 0.91125 1.01473 1.20196 0.98270 0.95696 0.94120 1.21258 0.99909 0.96628 0.97410 1.21364 0.97670 0.94848 0.99344 1.21177 1.00722 1.00884 0.91204 1.19545 0.98810 0.94642 0.94532 1.21429 0.93297 0.95523 0.96392 1.24555 1.00632 0.95608 1.00260 1.89189 1.15704 1.57406 1.50084 1.24459 0.98502 0.95710 1.01603 1.21035 0.99766 0.95723 0.97499 0.92779 0.99221 0.99248 0.92021 0.92018 0.86384 0.83525 0.83363 0.86766 0.85863 0.88131 0.87594 0.86090 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -31.09 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.00 4.95 29.85 0.15 2.15 16 10 C -0.07 -2.79 5.28 29.85 0.16 -2.64 16 11 C -0.08 -2.91 5.13 -19.87 -0.10 -3.02 16 12 C -0.13 -4.15 9.70 22.27 0.22 -3.93 16 13 C -0.11 -2.74 10.05 22.27 0.22 -2.51 16 14 C -0.12 -2.59 8.60 22.27 0.19 -2.39 16 15 C -0.07 -1.74 5.23 -19.86 -0.10 -1.84 16 16 C -0.05 -0.90 3.65 -11.51 -0.04 -0.94 16 17 C -0.06 -1.12 7.33 72.00 0.53 -0.59 16 18 S -0.35 -7.31 24.80 -56.49 -1.40 -8.71 16 19 C -0.05 -0.91 7.42 72.00 0.53 -0.38 16 20 C -0.12 -3.76 9.36 22.27 0.21 -3.55 16 21 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 22 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 24 H 0.06 2.47 8.09 -2.39 -0.02 2.45 16 25 H 0.06 2.46 8.08 -2.39 -0.02 2.45 16 26 H 0.12 3.59 8.06 -2.91 -0.02 3.56 16 27 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.15 2.16 6.63 -2.91 -0.02 2.14 16 29 H 0.11 2.29 8.07 -2.39 -0.02 2.27 16 30 H 0.12 1.81 6.39 -2.38 -0.02 1.80 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.12 1.68 7.61 -2.39 -0.02 1.66 16 34 H 0.12 3.59 8.04 -2.91 -0.02 3.56 16 Total: -1.00 -65.67 297.87 4.63 -61.04 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.07 Total: 8.34 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 2.65 Total: -49.99 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.28 Total: -56.80 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -7.31 SS G_CDS: -1.40 Total: -8.71 kcal Total: -65.67 4.63 -61.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.809 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds