Wall clock time and date at job start Mon Mar 30 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99924 * 2 1 4 4 H 1.48501 * 109.46947 * 270.00089 * 3 2 1 5 5 H 1.48498 * 109.47169 * 29.99612 * 3 2 1 6 6 H 1.48497 * 109.46993 * 149.99999 * 3 2 1 7 7 C 1.37874 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99920 * 170.16396 * 7 2 1 9 9 C 1.50697 * 119.99941 * 350.15946 * 7 2 1 10 10 C 1.50702 * 115.55018 * 324.11659 * 9 7 2 11 11 C 1.38261 * 119.94939 * 98.64510 * 10 9 7 12 12 C 1.38661 * 120.08675 * 180.02562 * 11 10 9 13 13 O 1.35976 * 119.98543 * 179.97438 * 12 11 10 14 14 C 1.38691 * 120.02555 * 0.02562 * 12 11 10 15 15 C 1.38497 * 119.98803 * 0.27318 * 14 12 11 16 16 C 1.38484 * 119.95343 * 278.66519 * 10 9 7 17 17 O 1.36602 * 131.46820 * 0.02792 * 16 10 9 18 18 C 1.44304 * 105.36698 * 162.12917 * 17 16 10 19 19 O 1.36507 * 131.47256 * 179.73281 * 15 14 12 20 20 C 1.53003 * 117.51863 * 109.82075 * 9 7 2 21 21 C 1.52998 * 59.99930 * 107.48353 * 20 9 7 22 22 H 0.97002 * 120.00451 * 355.16890 * 1 2 3 23 23 H 1.08003 * 119.95674 * 0.02562 * 11 10 9 24 24 H 0.96693 * 114.00291 * 270.02101 * 13 12 11 25 25 H 1.07994 * 120.00643 * 180.02562 * 14 12 11 26 26 H 1.08997 * 110.97637 * 268.89492 * 18 17 16 27 27 H 1.09005 * 110.31198 * 145.92943 * 18 17 16 28 28 H 1.09001 * 117.49692 * 214.97205 * 20 9 7 29 29 H 1.09000 * 117.49751 * 359.97438 * 20 9 7 30 30 H 1.09002 * 117.49838 * 252.51286 * 21 20 9 31 31 H 1.08994 * 117.50000 * 107.49593 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0726 -1.2009 -0.1592 9 6 1.2676 -2.4894 0.2242 10 6 0.1208 -2.4248 1.1997 11 6 -1.1754 -2.3032 0.7341 12 6 -2.2327 -2.2430 1.6292 13 8 -3.5066 -2.1229 1.1691 14 6 -1.9913 -2.3041 2.9936 15 6 -0.6933 -2.4196 3.4624 16 6 0.3667 -2.4868 2.5611 17 8 1.5312 -2.6040 3.2655 18 6 1.2083 -2.1903 4.6097 19 8 -0.1932 -2.4931 4.7305 20 6 1.1286 -3.4385 -0.9679 21 6 2.0830 -3.7832 0.1772 22 1 -0.4851 0.8370 0.0707 23 1 -1.3646 -2.2551 -0.3281 24 1 -3.8019 -1.2083 1.0628 25 1 -2.8151 -2.2576 3.6904 26 1 1.3798 -1.1219 4.7410 27 1 1.7890 -2.7640 5.3321 28 1 0.2076 -4.0161 -1.0465 29 1 1.5698 -3.1258 -1.9143 30 1 3.1524 -3.6974 -0.0158 31 1 1.7900 -4.5876 0.8518 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:42 Heat of formation + Delta-G solvation = -67.445602 kcal Electronic energy + Delta-G solvation = -18490.105205 eV Core-core repulsion = 15510.230257 eV Total energy + Delta-G solvation = -2979.874948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.90066 -39.91873 -38.54039 -36.92548 -35.99926 -34.16327 -31.00991 -29.86353 -27.67939 -26.48310 -24.30045 -23.81220 -22.69207 -21.34037 -19.66180 -18.74312 -18.34020 -17.82788 -17.60597 -16.64845 -16.54250 -15.79164 -15.62625 -15.20802 -14.96210 -14.90115 -13.94572 -13.75663 -13.61277 -13.32092 -12.92652 -12.89496 -12.79344 -12.34898 -12.13171 -11.84891 -11.48434 -11.22110 -11.07742 -10.68905 -10.15150 -9.42360 -8.71742 -8.01237 -6.17779 0.35469 0.50537 1.39311 1.42744 1.51399 1.90623 2.42004 2.71582 2.84113 3.00283 3.51700 3.55737 3.74995 3.96366 4.12972 4.27123 4.31227 4.37925 4.54900 4.69539 4.73565 4.91636 4.96842 5.14352 5.23117 5.30938 5.49928 5.55881 5.60901 5.75803 5.91180 6.29902 6.34260 6.78179 6.94539 7.41446 8.91320 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.010821 C = 0.010014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.783199 B = 2586.835466 C = 2795.502382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.035 3.965 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.052 0.948 9 C 0.051 3.949 10 C 0.034 3.966 11 C -0.068 4.068 12 C 0.099 3.901 13 O -0.495 6.495 14 C -0.146 4.146 15 C 0.018 3.982 16 C 0.003 3.997 17 O -0.321 6.321 18 C 0.203 3.797 19 O -0.320 6.320 20 C -0.192 4.192 21 C -0.184 4.184 22 H 0.262 0.738 23 H 0.122 0.878 24 H 0.405 0.595 25 H 0.151 0.849 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -1.804 6.040 6.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.167 4.167 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.051 3.949 10 C 0.033 3.967 11 C -0.087 4.087 12 C 0.055 3.945 13 O -0.307 6.307 14 C -0.165 4.165 15 C -0.026 4.026 16 C -0.041 4.041 17 O -0.238 6.238 18 C 0.092 3.908 19 O -0.237 6.237 20 C -0.229 4.229 21 C -0.221 4.221 22 H 0.071 0.929 23 H 0.140 0.860 24 H 0.263 0.737 25 H 0.169 0.831 26 H 0.103 0.897 27 H 0.181 0.819 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.859 -2.388 6.130 7.173 hybrid contribution 0.690 1.583 -0.024 1.727 sum -2.169 -0.806 6.106 6.529 Atomic orbital electron populations 1.70108 1.06314 1.27194 1.48036 1.25508 0.95729 1.01314 0.94154 0.85819 0.78953 0.80217 0.78225 1.20130 1.20621 1.20065 1.20618 0.93243 0.90334 1.50131 0.93023 1.17759 0.93447 0.89936 0.93805 1.18147 0.94429 0.95347 0.88772 1.20712 0.89953 0.98238 0.99812 1.17759 0.84383 1.02755 0.89651 1.84729 1.25254 1.33784 1.86969 1.20095 0.93307 1.07823 0.95276 1.19529 0.94525 1.05735 0.82817 1.19694 0.84143 1.06843 0.93387 1.87423 1.30549 1.83774 1.22036 1.26006 0.78905 1.01946 0.83907 1.87187 1.24483 1.87529 1.24544 1.23040 1.00106 1.05748 0.94036 1.22841 0.96938 0.99976 1.02369 0.92864 0.86013 0.73711 0.83084 0.89697 0.81866 0.90196 0.90241 0.90002 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.96 10.29 21.45 0.22 -45.74 16 2 C 0.04 1.85 5.26 84.66 0.45 2.30 16 3 Si 0.94 41.92 29.55 68.60 2.03 43.94 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.51 -27.32 9.04 25.60 0.23 -27.09 16 8 H 0.05 2.82 7.83 -2.91 -0.02 2.80 16 9 C 0.05 2.52 1.85 -53.67 -0.10 2.42 16 10 C 0.03 1.63 3.83 -19.80 -0.08 1.55 16 11 C -0.07 -3.02 7.27 22.38 0.16 -2.86 16 12 C 0.10 3.83 6.70 22.48 0.15 3.98 16 13 O -0.50 -15.90 13.50 -93.28 -1.26 -17.16 16 14 C -0.15 -5.43 10.00 22.44 0.22 -5.20 16 15 C 0.02 0.74 7.14 22.59 0.16 0.90 16 16 C 0.00 0.15 6.80 22.58 0.15 0.31 16 17 O -0.32 -13.68 11.42 -77.26 -0.88 -14.57 16 18 C 0.20 6.44 8.89 113.37 1.01 7.45 16 19 O -0.32 -11.56 11.40 -76.14 -0.87 -12.42 16 20 C -0.19 -8.52 9.58 30.59 0.29 -8.22 16 21 C -0.18 -8.11 9.90 30.59 0.30 -7.81 16 22 H 0.26 13.06 8.32 -92.71 -0.77 12.29 16 23 H 0.12 5.62 7.95 -2.91 -0.02 5.60 16 24 H 0.41 9.38 9.06 -74.06 -0.67 8.71 16 25 H 0.15 4.68 8.06 -2.91 -0.02 4.65 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 27 H 0.16 3.59 8.14 -2.38 -0.02 3.58 16 28 H 0.08 3.32 8.03 -2.39 -0.02 3.30 16 29 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 30 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -61.70 273.70 2.69 -59.01 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.49 Total: 19.21 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 2.96 Total: -32.27 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.22 Total: -45.74 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -3.01 Total: -44.15 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -61.70 2.69 -59.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.433 kcal (2) G-P(sol) polarization free energy of solvation -61.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds