Wall clock time and date at job start Mon Mar 30 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99922 * 2 1 4 4 H 1.48495 * 109.46960 * 270.00252 * 3 2 1 5 5 H 1.48502 * 109.46757 * 30.00222 * 3 2 1 6 6 H 1.48502 * 109.47245 * 149.99812 * 3 2 1 7 7 C 1.37879 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99836 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99968 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.37783 * 119.68765 * 265.00184 * 11 10 9 13 13 C 1.38295 * 119.51557 * 179.69264 * 12 11 10 14 14 C 1.37815 * 120.00935 * 0.37107 * 13 12 11 15 15 C 1.39275 * 121.04832 * 0.16349 * 14 13 12 16 16 C 1.38222 * 118.82920 * 359.22357 * 15 14 13 17 17 S 1.76452 * 122.29586 * 181.25771 * 16 15 14 18 18 C 1.81610 * 102.64010 * 346.41220 * 17 16 15 19 19 C 1.53523 * 107.33853 * 46.40610 * 18 17 16 20 20 C 1.50056 * 116.44017 * 178.26445 * 15 14 13 21 21 H 0.96997 * 120.00502 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46971 * 60.00184 * 9 7 2 23 23 H 1.08996 * 109.47254 * 300.00272 * 9 7 2 24 24 H 1.09003 * 109.46852 * 60.00324 * 10 9 7 25 25 H 1.08991 * 109.47009 * 300.00238 * 10 9 7 26 26 H 1.08004 * 120.24284 * 359.67592 * 12 11 10 27 27 H 1.07999 * 119.99461 * 180.39192 * 13 12 11 28 28 H 1.07999 * 119.47723 * 179.88420 * 14 13 12 29 29 H 1.09003 * 109.88257 * 165.85803 * 18 17 16 30 30 H 1.08997 * 109.88630 * 286.87104 * 18 17 16 31 31 H 1.09000 * 109.55037 * 47.29764 * 19 18 17 32 32 H 1.08997 * 109.55155 * 167.50357 * 19 18 17 33 33 H 1.08998 * 108.65865 * 36.37829 * 20 15 14 34 34 H 1.08999 * 108.68536 * 278.47093 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5287 -2.6364 -0.0022 12 6 6.2101 -2.7411 -1.1951 13 6 7.5930 -2.7342 -1.1927 14 6 8.2797 -2.6310 -0.0023 15 6 7.6031 -2.5357 1.2113 16 6 6.2209 -2.5298 1.2052 17 16 5.2721 -2.3803 2.6854 18 6 6.5088 -2.6773 3.9818 19 6 7.7465 -1.8381 3.6343 20 6 8.4526 -2.4684 2.4464 21 1 -0.4851 0.8400 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8745 -0.6799 -0.8911 24 1 3.6580 -3.1505 -0.8908 25 1 3.6587 -3.1501 0.8892 26 1 5.6682 -2.8282 -2.1253 27 1 8.1350 -2.8095 -2.1238 28 1 9.3596 -2.6284 -0.0102 29 1 6.1124 -2.3700 4.9496 30 1 6.7718 -3.7347 4.0080 31 1 7.4397 -0.8236 3.3802 32 1 8.4213 -1.8118 4.4899 33 1 9.3470 -1.8867 2.2233 34 1 8.7560 -3.4797 2.7171 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260278042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:01 Heat of formation + Delta-G solvation = -0.062342 kcal Electronic energy + Delta-G solvation = -15611.507700 eV Core-core repulsion = 13213.140675 eV Total energy + Delta-G solvation = -2398.367025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.34307 -35.90856 -33.87498 -32.08074 -30.58384 -29.44140 -26.93724 -25.16993 -22.99951 -21.87171 -20.75018 -19.62713 -17.27881 -16.66659 -15.69389 -15.41322 -15.16780 -14.27036 -14.20483 -13.65887 -13.24925 -12.94008 -12.90799 -12.67293 -12.54276 -12.22176 -11.63819 -11.54151 -11.37478 -11.04894 -10.91211 -10.54220 -10.12596 -9.92011 -9.76808 -9.52965 -9.22516 -9.08390 -8.46922 -8.24118 -7.03482 -5.98270 -3.95409 1.45659 1.60440 1.88300 2.71114 3.36137 3.43196 3.50517 3.90184 4.52028 4.57250 4.71009 4.77570 5.08136 5.23398 5.27495 5.36337 5.36873 5.44497 5.57859 5.65551 5.73432 5.80327 5.97561 6.03011 6.15414 6.31658 6.51994 6.56470 6.68004 6.86898 6.89216 7.20014 7.37280 7.52068 7.85056 8.59561 9.06553 9.64764 11.15182 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.007350 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.692581 B = 3808.438679 C = 4308.316989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.077 4.077 11 C -0.043 4.043 12 C -0.112 4.112 13 C -0.120 4.120 14 C -0.127 4.127 15 C -0.088 4.088 16 C -0.082 4.082 17 S -0.080 6.080 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.081 4.081 21 H 0.262 0.738 22 H 0.024 0.976 23 H 0.010 0.990 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.545 -5.540 4.641 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.042 4.042 10 C -0.114 4.114 11 C -0.048 4.048 12 C -0.132 4.132 13 C -0.140 4.140 14 C -0.147 4.147 15 C -0.094 4.094 16 C -0.194 4.194 17 S 0.164 5.836 18 C -0.277 4.277 19 C -0.160 4.160 20 C -0.118 4.118 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.028 0.972 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.189 -5.190 4.954 18.626 hybrid contribution 1.736 0.670 -0.322 1.889 sum 18.925 -4.520 4.632 20.001 Atomic orbital electron populations 1.69908 1.06242 1.26773 1.51458 1.24971 0.94663 0.99002 0.94608 0.86850 0.80686 0.83829 0.78499 1.20392 1.21381 1.18719 1.21109 0.89253 0.94476 1.50515 0.90949 1.19534 0.96960 0.91008 0.96657 1.20744 0.87249 1.00967 1.02485 1.20217 0.97587 0.96034 0.91008 1.21001 0.93998 1.00704 0.97514 1.20978 0.94446 1.00956 0.97619 1.21019 0.99061 1.02734 0.91904 1.19477 0.91896 1.02667 0.95361 1.21336 0.94681 1.06232 0.97201 1.86374 1.13293 1.88576 0.95325 1.23878 0.99033 1.03344 1.01402 1.21586 0.96470 0.99936 0.98026 1.20196 0.97959 1.01547 0.92142 0.92818 0.95759 0.97208 0.91435 0.90617 0.85517 0.86300 0.86668 0.87450 0.89604 0.90300 0.90442 0.90412 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 22.49 27.47 -169.99 -4.67 17.82 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.00 -0.10 3.98 -27.88 -0.11 -0.21 16 10 C -0.08 -1.62 4.66 -27.88 -0.13 -1.75 16 11 C -0.04 -0.80 5.16 -104.29 -0.54 -1.34 16 12 C -0.11 -1.82 9.67 -39.73 -0.38 -2.20 16 13 C -0.12 -1.65 10.03 -39.72 -0.40 -2.05 16 14 C -0.13 -1.70 9.48 -39.35 -0.37 -2.07 16 15 C -0.09 -1.28 5.77 -104.55 -0.60 -1.88 16 16 C -0.08 -1.42 6.05 -39.09 -0.24 -1.66 16 17 S -0.08 -1.36 19.37 -107.50 -2.08 -3.44 16 18 C -0.13 -1.53 6.52 37.43 0.24 -1.28 16 19 C -0.12 -1.31 5.84 -27.03 -0.16 -1.46 16 20 C -0.08 -0.90 5.28 -28.76 -0.15 -1.05 16 21 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 22 H 0.02 0.62 6.52 -51.93 -0.34 0.28 16 23 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 24 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 25 H 0.08 1.63 6.84 -51.93 -0.36 1.27 16 26 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.12 1.21 8.01 -52.49 -0.42 0.79 16 29 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 287.06 15.07 4.33 4.33 Total: -1.00 -32.04 287.06 -9.80 -41.84 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.88 Total: -2.47 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -3.27 Total: -30.41 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.77 Total: -27.66 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.08 Total: -3.44 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.04 -9.80 -41.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.774 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds