Wall clock time and date at job start Mon Mar 30 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99899 * 2 1 4 4 H 1.48502 * 109.47221 * 270.00144 * 3 2 1 5 5 H 1.48503 * 109.47293 * 29.99785 * 3 2 1 6 6 H 1.48502 * 109.47284 * 149.99768 * 3 2 1 7 7 C 1.37873 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00615 * 185.10895 * 7 2 1 9 9 C 1.50704 * 119.99571 * 5.11154 * 7 2 1 10 10 H 1.08996 * 109.47210 * 5.10767 * 9 7 2 11 11 C 1.50698 * 109.46665 * 245.10709 * 9 7 2 12 12 C 1.37920 * 120.06490 * 304.92896 * 11 9 7 13 13 C 1.38345 * 120.20199 * 179.72259 * 12 11 9 14 14 C 1.38641 * 120.32408 * 0.55756 * 13 12 11 15 15 F 1.35092 * 119.94208 * 179.74556 * 14 13 12 16 16 C 1.38102 * 120.11677 * 359.72195 * 14 13 12 17 17 C 1.39832 * 120.06182 * 125.20833 * 11 9 7 18 18 C 1.47175 * 120.15998 * 0.02562 * 17 11 9 19 19 O 1.21254 * 120.00609 * 174.70891 * 18 17 11 20 20 C 1.53001 * 109.47206 * 125.11060 * 9 7 2 21 21 C 1.53000 * 117.49591 * 294.59843 * 20 9 7 22 22 C 1.52999 * 60.03305 * 252.50110 * 21 20 9 23 23 H 0.96998 * 119.99545 * 0.02562 * 1 2 3 24 24 H 1.07991 * 119.89427 * 0.02562 * 12 11 9 25 25 H 1.08000 * 119.84074 * 180.28036 * 13 12 11 26 26 H 1.07998 * 120.09849 * 180.02562 * 16 14 13 27 27 H 1.08004 * 119.99609 * 354.69783 * 18 17 11 28 28 H 1.08997 * 115.55058 * 80.27152 * 20 9 7 29 29 H 1.09003 * 117.50046 * 0.02562 * 21 20 9 30 30 H 1.08999 * 117.49814 * 144.99867 * 21 20 9 31 31 H 1.08997 * 117.49958 * 107.50009 * 22 21 20 32 32 H 1.09004 * 117.50155 * 252.52513 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0838 9 6 1.2556 -2.4966 -0.1152 10 1 0.1974 -2.2938 -0.2800 11 6 1.4235 -3.2871 1.1568 12 6 2.6866 -3.5763 1.6290 13 6 2.8440 -4.2969 2.7994 14 6 1.7347 -4.7439 3.5007 15 9 1.8974 -5.4514 4.6400 16 6 0.4638 -4.4668 3.0369 17 6 0.2988 -3.7338 1.8574 18 6 -1.0520 -3.4346 1.3557 19 8 -2.0227 -3.9033 1.9109 20 6 1.8102 -3.3010 -1.2925 21 6 1.6188 -2.7224 -2.6960 22 6 0.8013 -3.9372 -2.2520 23 1 -0.4849 0.8401 -0.0004 24 1 3.5554 -3.2350 1.0859 25 1 3.8358 -4.5162 3.1662 26 1 -0.4001 -4.8148 3.5837 27 1 -1.1787 -2.7972 0.4930 28 1 2.7318 -3.8485 -1.0952 29 1 1.0981 -1.7686 -2.7804 30 1 2.4145 -2.8894 -3.4220 31 1 -0.2575 -3.7826 -2.0444 32 1 1.0594 -4.9033 -2.6856 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:17 Heat of formation + Delta-G solvation = -39.948308 kcal Electronic energy + Delta-G solvation = -17710.097779 eV Core-core repulsion = 14743.787992 eV Total energy + Delta-G solvation = -2966.309786 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.46490 -39.39294 -37.61514 -36.45687 -33.11108 -31.15952 -30.78738 -27.18017 -24.49576 -23.88633 -21.70015 -21.47968 -20.40916 -19.21203 -17.37475 -16.73152 -15.82503 -15.46069 -15.19029 -14.81846 -14.79959 -14.32536 -13.84510 -13.64782 -13.33211 -13.12100 -12.70432 -12.21351 -11.67893 -11.42813 -11.28003 -11.00438 -10.80812 -10.74596 -10.63212 -10.10222 -9.74368 -9.51676 -8.97947 -8.75323 -8.70838 -8.60303 -7.86903 -6.28518 -4.29986 1.12506 1.78110 2.97443 3.18774 3.27232 3.28833 4.19304 4.30391 4.60262 4.68706 5.01813 5.07978 5.26006 5.39119 5.47166 5.74263 5.80326 5.83540 5.97651 6.02525 6.25712 6.29318 6.41267 6.56839 6.63813 6.69421 6.74158 6.90537 6.94796 7.15932 7.41084 7.52907 7.67493 7.98484 8.09148 8.76633 9.33213 10.80245 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.008404 C = 0.007756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.304752 B = 3330.857858 C = 3609.054341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.073 3.927 10 H 0.088 0.912 11 C 0.024 3.976 12 C -0.103 4.103 13 C -0.124 4.124 14 C 0.046 3.954 15 F -0.151 7.151 16 C -0.097 4.097 17 C -0.179 4.179 18 C 0.392 3.608 19 O -0.485 6.485 20 C -0.122 4.122 21 C -0.164 4.164 22 C -0.203 4.203 23 H 0.267 0.733 24 H 0.135 0.865 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 -5.726 -0.198 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.055 3.945 10 H 0.106 0.894 11 C 0.023 3.977 12 C -0.121 4.121 13 C -0.143 4.143 14 C 0.027 3.973 15 F -0.130 7.130 16 C -0.116 4.116 17 C -0.180 4.180 18 C 0.253 3.747 19 O -0.360 6.360 20 C -0.140 4.140 21 C -0.201 4.201 22 C -0.240 4.240 23 H 0.077 0.923 24 H 0.152 0.848 25 H 0.145 0.855 26 H 0.151 0.849 27 H 0.139 0.861 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.956 -5.861 0.139 6.565 hybrid contribution 0.739 0.897 0.319 1.205 sum 3.694 -4.963 0.458 6.204 Atomic orbital electron populations 1.69811 1.05992 1.27497 1.49311 1.24967 0.94946 0.99489 0.94005 0.86521 0.79906 0.82931 0.78303 1.20401 1.21176 1.19728 1.20872 0.93296 0.88944 1.50660 0.92095 1.18016 1.00845 0.91089 0.84595 0.89410 1.21163 0.90924 0.87975 0.97646 1.20891 0.98318 0.97737 0.95135 1.21297 0.97542 0.99377 0.96121 1.17423 0.94321 0.99831 0.85677 1.91433 1.96462 1.76811 1.48307 1.21229 0.95816 0.97983 0.96586 1.20603 0.96976 1.03080 0.97351 1.24439 0.86049 0.77771 0.86429 1.90414 1.42617 1.45776 1.57217 1.22521 0.98446 1.00773 0.92280 1.22688 1.02112 0.97492 0.97857 1.23026 0.97700 0.96592 1.06725 0.92302 0.84755 0.85456 0.84925 0.86065 0.89755 0.88454 0.90541 0.89540 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.61 12.63 55.43 0.70 -21.91 16 2 C 0.07 1.70 5.45 -17.82 -0.10 1.60 16 3 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.50 -11.72 7.55 -34.44 -0.26 -11.98 16 8 H 0.06 1.42 7.58 -52.49 -0.40 1.02 16 9 C 0.07 1.53 2.23 -92.92 -0.21 1.32 16 10 H 0.09 1.98 4.08 -51.93 -0.21 1.76 16 11 C 0.02 0.47 4.82 -104.14 -0.50 -0.03 16 12 C -0.10 -1.82 8.70 -39.66 -0.35 -2.16 16 13 C -0.12 -2.03 10.02 -39.39 -0.39 -2.42 16 14 C 0.05 0.81 7.29 -39.48 -0.29 0.52 16 15 F -0.15 -2.56 17.26 2.25 0.04 -2.53 16 16 C -0.10 -1.79 9.58 -39.03 -0.37 -2.17 16 17 C -0.18 -3.51 5.87 -105.07 -0.62 -4.13 16 18 C 0.39 7.83 10.97 34.36 0.38 8.21 16 19 O -0.48 -10.36 17.18 5.58 0.10 -10.27 16 20 C -0.12 -2.24 4.96 -90.58 -0.45 -2.69 16 21 C -0.16 -2.91 10.01 -26.73 -0.27 -3.18 16 22 C -0.20 -3.39 10.18 -26.69 -0.27 -3.66 16 23 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 24 H 0.13 2.22 7.72 -52.49 -0.41 1.82 16 25 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.13 2.36 7.66 -52.49 -0.40 1.96 16 27 H 0.12 2.43 5.94 -52.48 -0.31 2.12 16 28 H 0.08 1.46 7.77 -51.93 -0.40 1.06 16 29 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 285.18 15.07 4.30 4.30 Total: -1.00 -25.48 285.18 -6.96 -32.44 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.38 Total: 4.24 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -3.70 Total: -20.76 kcal Atomic # 7 Polarization: -22.61 SS G_CDS: 0.70 Total: -21.91 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.10 Total: -10.27 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -25.48 -6.96 -32.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.508 kcal (2) G-P(sol) polarization free energy of solvation -25.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds