Wall clock time and date at job start Mon Mar 30 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99899 * 2 1 4 4 H 1.48502 * 109.47221 * 270.00144 * 3 2 1 5 5 H 1.48503 * 109.47293 * 29.99785 * 3 2 1 6 6 H 1.48502 * 109.47284 * 149.99768 * 3 2 1 7 7 C 1.37873 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00615 * 185.10895 * 7 2 1 9 9 C 1.50704 * 119.99571 * 5.11154 * 7 2 1 10 10 H 1.08996 * 109.47210 * 5.10767 * 9 7 2 11 11 C 1.50698 * 109.46665 * 245.10709 * 9 7 2 12 12 C 1.37920 * 120.06490 * 304.92896 * 11 9 7 13 13 C 1.38345 * 120.20199 * 179.72259 * 12 11 9 14 14 C 1.38641 * 120.32408 * 0.55756 * 13 12 11 15 15 F 1.35092 * 119.94208 * 179.74556 * 14 13 12 16 16 C 1.38102 * 120.11677 * 359.72195 * 14 13 12 17 17 C 1.39832 * 120.06182 * 125.20833 * 11 9 7 18 18 C 1.47175 * 120.15998 * 0.02562 * 17 11 9 19 19 O 1.21254 * 120.00609 * 174.70891 * 18 17 11 20 20 C 1.53001 * 109.47206 * 125.11060 * 9 7 2 21 21 C 1.53000 * 117.49591 * 294.59843 * 20 9 7 22 22 C 1.52999 * 60.03305 * 252.50110 * 21 20 9 23 23 H 0.96998 * 119.99545 * 0.02562 * 1 2 3 24 24 H 1.07991 * 119.89427 * 0.02562 * 12 11 9 25 25 H 1.08000 * 119.84074 * 180.28036 * 13 12 11 26 26 H 1.07998 * 120.09849 * 180.02562 * 16 14 13 27 27 H 1.08004 * 119.99609 * 354.69783 * 18 17 11 28 28 H 1.08997 * 115.55058 * 80.27152 * 20 9 7 29 29 H 1.09003 * 117.50046 * 0.02562 * 21 20 9 30 30 H 1.08999 * 117.49814 * 144.99867 * 21 20 9 31 31 H 1.08997 * 117.49958 * 107.50009 * 22 21 20 32 32 H 1.09004 * 117.50155 * 252.52513 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0838 9 6 1.2556 -2.4966 -0.1152 10 1 0.1974 -2.2938 -0.2800 11 6 1.4235 -3.2871 1.1568 12 6 2.6866 -3.5763 1.6290 13 6 2.8440 -4.2969 2.7994 14 6 1.7347 -4.7439 3.5007 15 9 1.8974 -5.4514 4.6400 16 6 0.4638 -4.4668 3.0369 17 6 0.2988 -3.7338 1.8574 18 6 -1.0520 -3.4346 1.3557 19 8 -2.0227 -3.9033 1.9109 20 6 1.8102 -3.3010 -1.2925 21 6 1.6188 -2.7224 -2.6960 22 6 0.8013 -3.9372 -2.2520 23 1 -0.4849 0.8401 -0.0004 24 1 3.5554 -3.2350 1.0859 25 1 3.8358 -4.5162 3.1662 26 1 -0.4001 -4.8148 3.5837 27 1 -1.1787 -2.7972 0.4930 28 1 2.7318 -3.8485 -1.0952 29 1 1.0981 -1.7686 -2.7804 30 1 2.4145 -2.8894 -3.4220 31 1 -0.2575 -3.7826 -2.0444 32 1 1.0594 -4.9033 -2.6856 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:17 Heat of formation + Delta-G solvation = -50.628505 kcal Electronic energy + Delta-G solvation = -17710.560907 eV Core-core repulsion = 14743.787992 eV Total energy + Delta-G solvation = -2966.772914 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.83291 -40.91489 -39.18919 -37.89622 -34.82277 -32.71809 -32.24820 -28.80545 -26.01608 -25.55649 -23.13862 -22.87660 -21.89016 -20.72783 -18.89054 -18.38549 -17.38497 -16.89182 -16.58448 -16.50687 -16.30745 -15.80720 -15.31619 -15.25813 -14.88154 -14.50679 -14.25898 -13.78259 -13.30151 -12.97816 -12.91087 -12.56468 -12.33420 -12.19429 -12.15833 -11.72913 -11.40618 -10.96693 -10.59418 -10.46442 -10.31710 -10.02442 -9.34438 -8.11755 -6.16460 -0.35211 0.34053 1.44864 1.45524 1.49650 1.55593 2.44879 2.79270 3.15086 3.16184 3.37306 3.56367 3.89091 3.96348 4.07734 4.31411 4.37403 4.43805 4.51864 4.59006 4.88464 4.93081 4.99376 5.12939 5.20961 5.23771 5.30617 5.45181 5.53111 5.66115 5.76456 5.94303 5.99024 6.30187 6.43813 6.96272 7.48265 8.95847 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.008404 C = 0.007756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.304752 B = 3330.857858 C = 3609.054341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.024 3.976 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.062 0.938 9 C 0.071 3.929 10 H 0.065 0.935 11 C 0.012 3.988 12 C -0.105 4.105 13 C -0.106 4.106 14 C 0.048 3.952 15 F -0.146 7.146 16 C -0.103 4.103 17 C -0.194 4.194 18 C 0.398 3.602 19 O -0.504 6.504 20 C -0.132 4.132 21 C -0.167 4.167 22 C -0.189 4.189 23 H 0.262 0.738 24 H 0.149 0.851 25 H 0.165 0.835 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -6.780 -0.027 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.053 3.947 10 H 0.084 0.916 11 C 0.011 3.989 12 C -0.122 4.122 13 C -0.125 4.125 14 C 0.029 3.971 15 F -0.125 7.125 16 C -0.122 4.122 17 C -0.195 4.195 18 C 0.260 3.740 19 O -0.381 6.381 20 C -0.151 4.151 21 C -0.204 4.204 22 C -0.226 4.226 23 H 0.071 0.929 24 H 0.167 0.833 25 H 0.182 0.818 26 H 0.152 0.848 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.999 -6.921 0.307 8.543 hybrid contribution 0.146 1.149 0.295 1.195 sum 5.145 -5.772 0.601 7.755 Atomic orbital electron populations 1.69924 1.06994 1.27474 1.51412 1.25553 0.95469 1.01928 0.94608 0.85775 0.78958 0.80182 0.78065 1.20300 1.22085 1.19108 1.21161 0.93440 0.89992 1.49046 0.91962 1.17907 0.99415 0.90978 0.86409 0.91646 1.21094 0.91935 0.88794 0.97119 1.21051 0.97768 0.97701 0.95721 1.21610 0.98829 0.97243 0.94809 1.17498 0.94245 0.99583 0.85788 1.91451 1.96393 1.76638 1.48019 1.21295 0.96719 0.97949 0.96282 1.20534 0.96478 1.04323 0.98161 1.24426 0.86387 0.77116 0.86037 1.90397 1.43234 1.46662 1.57815 1.22446 0.99649 1.01439 0.91551 1.22669 1.02900 0.96753 0.98113 1.23062 0.96881 0.97373 1.05239 0.92874 0.83323 0.81772 0.84782 0.86616 0.88098 0.91253 0.88139 0.90475 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.89 12.63 21.45 0.27 -47.62 16 2 C 0.02 1.18 5.45 84.65 0.46 1.64 16 3 Si 0.94 40.03 29.54 68.60 2.03 42.05 16 4 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.50 -23.10 7.55 25.60 0.19 -22.90 16 8 H 0.06 2.81 7.58 -2.91 -0.02 2.79 16 9 C 0.07 2.96 2.23 -12.29 -0.03 2.93 16 10 H 0.07 3.02 4.08 -2.39 -0.01 3.01 16 11 C 0.01 0.44 4.82 -19.55 -0.09 0.35 16 12 C -0.10 -3.41 8.70 22.22 0.19 -3.21 16 13 C -0.11 -3.07 10.02 22.39 0.22 -2.85 16 14 C 0.05 1.54 7.29 22.33 0.16 1.71 16 15 F -0.15 -4.54 17.26 44.97 0.78 -3.76 16 16 C -0.10 -3.70 9.58 22.63 0.22 -3.48 16 17 C -0.19 -7.53 5.87 -20.16 -0.12 -7.65 16 18 C 0.40 16.23 10.97 70.17 0.77 17.00 16 19 O -0.50 -21.93 17.18 -2.95 -0.05 -21.98 16 20 C -0.13 -4.68 4.96 -10.77 -0.05 -4.73 16 21 C -0.17 -5.72 10.01 30.59 0.31 -5.41 16 22 C -0.19 -5.98 10.18 30.62 0.31 -5.67 16 23 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 24 H 0.15 4.41 7.72 -2.92 -0.02 4.39 16 25 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 26 H 0.13 4.69 7.66 -2.91 -0.02 4.66 16 27 H 0.12 4.86 5.94 -2.91 -0.02 4.84 16 28 H 0.10 3.22 7.77 -2.39 -0.02 3.20 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.10 2.91 8.14 -2.39 -0.02 2.90 16 31 H 0.08 2.58 8.08 -2.39 -0.02 2.56 16 32 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -53.58 285.18 6.71 -46.87 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.14 Total: 16.72 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 2.55 Total: -32.28 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.27 Total: -47.62 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.78 Total: -3.76 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.05 kcal Total: -53.58 6.71 -46.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.758 kcal (2) G-P(sol) polarization free energy of solvation -53.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds