Wall clock time and date at job start Mon Mar 30 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38764 * 120.00064 * 2 1 4 4 C 1.37148 * 120.61877 * 179.97438 * 3 2 1 5 5 C 1.41201 * 120.42298 * 0.27852 * 4 3 2 6 6 N 1.34612 * 128.74095 * 180.36851 * 5 4 3 7 7 C 1.28999 * 117.90605 * 179.62584 * 6 5 4 8 8 N 1.37880 * 124.82655 * 179.69740 * 7 6 5 9 9 C 1.46496 * 119.99928 * 180.02562 * 8 7 6 10 10 C 1.36933 * 119.99784 * 0.02841 * 8 7 6 11 11 H 1.08000 * 120.00057 * 22.37010 * 10 8 7 12 12 C 1.38808 * 119.99528 * 202.37542 * 10 8 7 13 13 N 1.31554 * 120.00367 * 11.27135 * 12 10 8 14 14 Si 1.86802 * 119.99857 * 191.27325 * 12 10 8 15 15 H 1.48500 * 109.47035 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47347 * 119.99627 * 14 12 10 17 17 H 1.48492 * 109.47238 * 239.99993 * 14 12 10 18 18 S 1.75812 * 110.35040 * 359.72042 * 7 6 5 19 19 C 1.39895 * 118.36144 * 359.45928 * 5 4 3 20 20 C 1.37697 * 119.99644 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46645 * 90.00245 * 1 2 3 22 22 H 1.09001 * 109.47236 * 210.00076 * 1 2 3 23 23 H 1.09000 * 109.46955 * 330.00542 * 1 2 3 24 24 H 1.07997 * 119.68953 * 359.95543 * 3 2 1 25 25 H 1.08001 * 119.78468 * 179.97438 * 4 3 2 26 26 H 1.09003 * 109.47302 * 93.63201 * 9 8 7 27 27 H 1.09004 * 109.47273 * 213.63152 * 9 8 7 28 28 H 1.08997 * 109.47570 * 333.62970 * 9 8 7 29 29 H 0.96999 * 119.99853 * 179.97438 * 13 12 10 30 30 H 1.07994 * 119.90708 * 0.04935 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2009 1.2017 0.0000 4 6 3.5723 1.2165 0.0005 5 6 4.3004 0.0067 -0.0048 6 7 5.6344 -0.1737 0.0015 7 6 6.0799 -1.3843 0.0019 8 7 7.4141 -1.7323 0.0021 9 6 7.8025 -3.1449 0.0020 10 6 8.3759 -0.7577 0.0024 11 1 8.1395 0.2342 0.3584 12 6 9.6546 -1.0445 -0.4551 13 7 9.8884 -2.1724 -1.0907 14 14 11.0437 0.1711 -0.1683 15 1 10.5234 1.3535 0.5641 16 1 12.1118 -0.4779 0.6337 17 1 11.6001 0.6043 -1.4751 18 16 4.7441 -2.5274 0.0017 19 6 3.5884 -1.1975 0.0010 20 6 2.1955 -1.1925 0.0005 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6559 2.1341 -0.0007 25 1 4.0987 2.1596 0.0001 26 1 7.9618 -3.4779 -1.0236 27 1 8.7239 -3.2684 0.5713 28 1 7.0111 -3.7394 0.4583 29 1 10.7819 -2.3726 -1.4107 30 1 1.6540 -2.1269 0.0001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260328015.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:48 Heat of formation + Delta-G solvation = 58.901422 kcal Electronic energy + Delta-G solvation = -15114.513163 eV Core-core repulsion = 12615.162656 eV Total energy + Delta-G solvation = -2499.350508 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.17298 -37.35397 -35.27172 -32.24697 -30.75802 -29.90893 -27.01684 -26.11650 -24.13755 -22.74882 -21.06960 -20.11381 -17.62688 -17.16906 -16.03818 -15.06699 -14.77538 -14.33702 -14.20858 -13.65345 -13.56494 -13.38867 -12.98117 -12.58495 -12.04146 -11.84663 -11.67429 -11.44976 -11.21687 -11.05591 -10.87972 -10.62041 -10.51714 -9.96425 -9.47520 -9.21190 -8.61428 -8.28514 -7.35112 -6.94189 -6.68022 -4.08558 1.56801 1.92560 2.13761 2.70338 2.96761 3.06312 3.13657 3.40545 3.80920 4.28923 4.53359 4.80411 5.31839 5.35968 5.52905 5.63587 5.87224 5.90698 5.99975 6.11206 6.19586 6.36241 6.48562 6.70190 6.83359 6.89671 7.08715 7.14996 7.18697 7.46040 7.54377 8.17605 8.71621 8.93818 9.31980 10.23639 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.040699 B = 0.006015 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.812090 B = 4654.158997 C = 5274.292939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.155 4.155 3 C -0.085 4.085 4 C -0.130 4.130 5 C 0.184 3.816 6 N -0.592 5.592 7 C 0.334 3.666 8 N -0.369 5.369 9 C 0.114 3.886 10 C -0.282 4.282 11 H 0.115 0.885 12 C 0.030 3.970 13 N -0.861 5.861 14 Si 0.942 3.058 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.276 1.276 18 S -0.057 6.057 19 C -0.224 4.224 20 C -0.042 4.042 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.277 0.723 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 0.208 1.817 8.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.159 4.159 3 C -0.106 4.106 4 C -0.153 4.153 5 C 0.056 3.944 6 N -0.324 5.324 7 C -0.038 4.038 8 N -0.059 5.059 9 C -0.030 4.030 10 C -0.414 4.414 11 H 0.132 0.868 12 C -0.177 4.177 13 N -0.496 5.496 14 Si 0.767 3.233 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.201 1.201 18 S 0.189 5.811 19 C -0.345 4.345 20 C -0.065 4.065 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.303 -0.830 1.725 7.550 hybrid contribution 0.407 1.110 -0.027 1.183 sum -6.896 0.280 1.699 7.107 Atomic orbital electron populations 1.20547 0.91779 1.01669 1.01206 1.19291 0.95064 0.92600 1.08956 1.20500 0.93257 0.96923 0.99959 1.20323 0.92907 0.95435 1.06672 1.18971 0.87101 0.92945 0.95384 1.66131 1.11173 1.18598 1.36540 1.23747 0.89263 0.88915 1.01830 1.42368 0.98972 1.06959 1.57631 1.21802 0.99047 0.78763 1.03346 1.20163 0.88080 0.94357 1.38801 0.86784 1.25622 0.99514 0.97972 0.94642 1.70063 1.23272 1.23608 1.32676 0.85587 0.79248 0.79826 0.78617 1.18609 1.20117 1.20148 1.84294 1.00361 1.11476 1.84944 1.23084 0.97662 0.95287 1.18438 1.19887 0.90345 0.97198 0.99108 0.92365 0.92511 0.92331 0.86631 0.86320 0.90690 0.89878 0.94459 0.91245 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.15 -2.47 5.88 -104.62 -0.62 -3.09 16 3 C -0.09 -1.40 9.65 -39.78 -0.38 -1.78 16 4 C -0.13 -2.53 10.10 -38.85 -0.39 -2.92 16 5 C 0.18 4.21 6.94 -84.90 -0.59 3.62 16 6 N -0.59 -15.11 9.89 -11.16 -0.11 -15.22 16 7 C 0.33 8.26 7.82 -88.94 -0.70 7.56 16 8 N -0.37 -9.19 3.10 -123.44 -0.38 -9.57 16 9 C 0.11 2.48 8.70 59.84 0.52 3.00 16 10 C -0.28 -7.28 9.41 -15.06 -0.14 -7.42 16 11 H 0.11 3.05 7.56 -52.49 -0.40 2.66 16 12 C 0.03 0.73 5.13 -17.46 -0.09 0.64 16 13 N -0.86 -21.09 10.58 55.49 0.59 -20.50 16 14 Si 0.94 19.06 29.57 -169.99 -5.03 14.04 16 15 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 16 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 18 S -0.06 -1.21 21.82 -107.50 -2.35 -3.55 16 19 C -0.22 -4.76 6.52 -38.57 -0.25 -5.01 16 20 C -0.04 -0.75 9.71 -39.39 -0.38 -1.13 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 23 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 24 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 25 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 26 H 0.07 1.69 7.45 -51.93 -0.39 1.31 16 27 H 0.08 1.82 7.15 -51.93 -0.37 1.45 16 28 H 0.04 0.72 6.89 -51.93 -0.36 0.36 16 29 H 0.28 6.33 8.31 -40.82 -0.34 5.99 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 271.99 15.07 4.10 4.10 Total: -1.00 -27.66 271.99 -9.02 -36.67 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.18 Total: 1.34 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.66 Total: -7.31 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.09 Total: -45.30 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.35 Total: -3.55 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.66 -9.02 -36.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328015.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.574 kcal (2) G-P(sol) polarization free energy of solvation -27.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds